BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0505200 Os09g0505200|Os09g0505200
         (435 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0505200  Similar to Transcriptional activator FHA1           841   0.0  
Os08g0528900  Similar to Transcriptional activator FHA1           226   2e-59

>Os09g0505200 Similar to Transcriptional activator FHA1
          Length = 435

 Score =  841 bits (2173), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/435 (93%), Positives = 408/435 (93%)

Query: 1   MGVIFAQKSKNSASEADYFCFERIASRSGKEFILRVLSQIWGGLHILLXXXXXXXXXXXT 60
           MGVIFAQKSKNSASEADYFCFERIASRSGKEFILRVLSQIWGGLHILL           T
Sbjct: 1   MGVIFAQKSKNSASEADYFCFERIASRSGKEFILRVLSQIWGGLHILLSRSAADSSRAAT 60

Query: 61  GILKMASSISVMASAGRNRGVGFAKLQGEDFEYFMQTYSIILGRDSKREKVDLDISGGDL 120
           GILKMASSISVMASAGRNRGVGFAKLQGEDFEYFMQTYSIILGRDSKREKVDLDISGGDL
Sbjct: 61  GILKMASSISVMASAGRNRGVGFAKLQGEDFEYFMQTYSIILGRDSKREKVDLDISGGDL 120

Query: 121 TISRHHAHIFYDFECKRFSLLVLGKCGCTVEGVLHLPGGSPIKLDSQDLLQIGHKKFYFL 180
           TISRHHAHIFYDFECKRFSLLVLGKCGCTVEGVLHLPGGSPIKLDSQDLLQIGHKKFYFL
Sbjct: 121 TISRHHAHIFYDFECKRFSLLVLGKCGCTVEGVLHLPGGSPIKLDSQDLLQIGHKKFYFL 180

Query: 181 LPTRSIFGTSSNQHGPSASAAFQPANNGTAADEHNLTASAAAQPAHIGTAAPPPHIGTAQ 240
           LPTRSIFGTSSNQHGPSASAAFQPANNGTAADEHNLTASAAAQPAHIGTAAPPPHIGTAQ
Sbjct: 181 LPTRSIFGTSSNQHGPSASAAFQPANNGTAADEHNLTASAAAQPAHIGTAAPPPHIGTAQ 240

Query: 241 PGQIGIVTLPPXXXXXXXXXXXXXXXXTQEEFMNQNKMPFGELDTCSSHHITIEPTLAPG 300
           PGQIGIVTLPP                TQEEFMNQNKMPFGELDTCSSHHITIEPTLAPG
Sbjct: 241 PGQIGIVTLPPAHIQNNAENENIAGIETQEEFMNQNKMPFGELDTCSSHHITIEPTLAPG 300

Query: 301 GQPVNNLAIRPADNNKDQQEVLLKEEEYVLASIGIVISDLCGLKKMIPIEKLHSELVACY 360
           GQPVNNLAIRPADNNKDQQEVLLKEEEYVLASIGIVISDLCGLKKMIPIEKLHSELVACY
Sbjct: 301 GQPVNNLAIRPADNNKDQQEVLLKEEEYVLASIGIVISDLCGLKKMIPIEKLHSELVACY 360

Query: 361 SATWPQRQVQMHLAPEAGSSAAGTECKPWLKLMYLLRKRGKLHETYSNISGSFSPWRLLR 420
           SATWPQRQVQMHLAPEAGSSAAGTECKPWLKLMYLLRKRGKLHETYSNISGSFSPWRLLR
Sbjct: 361 SATWPQRQVQMHLAPEAGSSAAGTECKPWLKLMYLLRKRGKLHETYSNISGSFSPWRLLR 420

Query: 421 SNITPWLRELETEKL 435
           SNITPWLRELETEKL
Sbjct: 421 SNITPWLRELETEKL 435



>Os08g0528900 Similar to Transcriptional activator FHA1
          Length = 343

 Score =  226 bits (577), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 132/320 (41%), Positives = 180/320 (56%), Gaps = 27/320 (8%)

Query: 81  VGFAKLQGEDFEYFMQTYSIILGRDSKREKVDLDIS--GGDLTISRHHAHIFYDFECKRF 138
            GFAKLQGEDFEY+MQTYSI+LGR+SK+  VD+D+S  GG + ISRHHA IFYDF+ +RF
Sbjct: 22  AGFAKLQGEDFEYYMQTYSIMLGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFQRRRF 81

Query: 139 SLLVLGKCGCTVEGVLHLPGGSPIKLDSQDLLQIGHKKFYFLLPTRSIFGTSSNQHGPSA 198
           +L V+GK GC VEGVLHLPG  P+KLDSQDLLQIG KKFYFLLPTRSIF         SA
Sbjct: 82  ALDVIGKNGCLVEGVLHLPGNHPVKLDSQDLLQIGDKKFYFLLPTRSIF--------ASA 133

Query: 199 SAAFQPANNGTAADEHNLTASAAAQPAHIGTAAPPPHIGTAQPGQIGIVTLPPXXXXXXX 258
           +AA  P          +   +   + +     +     G  +  +IG             
Sbjct: 134 AAARHPPIIPQQMPPPSYVRTGRPRLSEFHDRSFEGDYGR-EGDEIG------------- 179

Query: 259 XXXXXXXXXTQEEFMNQNKMPFGELDTCSSHHITIEPTLAPGGQPVNNLAIRPADNNKDQ 318
                     + + + +NK    E +    H I +E     G    + +  R  D + D 
Sbjct: 180 -NGISESGGMRGKLIKRNKKLSAESEMYGGHRINVEAIGTLGEDSRSEIRSR-GDRDMDN 237

Query: 319 QEVLLKEEEYVLASIGIVISDLCGLKKMIPIEKLHSELVACYSATWPQRQVQMHLAPEAG 378
           Q +L  EE+ V++S+  V+SDLCG  + +P+ KLH+EL+  +   W   +V+ +L+PE  
Sbjct: 238 QHILQAEEKDVVSSVATVLSDLCGPGEWMPMAKLHTELLEQFGNVWHHSRVRKYLSPEDW 297

Query: 379 SSAAGTECKPWLKLMYLLRK 398
           S    T+ +PW  L+ LLRK
Sbjct: 298 SPTE-TKGRPWYGLLALLRK 316



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.135    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,638,139
Number of extensions: 616282
Number of successful extensions: 2175
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 2168
Number of HSP's successfully gapped: 3
Length of query: 435
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 331
Effective length of database: 11,605,545
Effective search space: 3841435395
Effective search space used: 3841435395
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)