Os09g0505200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Transcriptional activator FHA1.
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Os09g0505200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Transcriptional activator FHA1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.63 | 0.272 | 9.48 | -0.649 | 0.777 | -0.419 | -0.03 | -0.168 | -0.0322 | 6.64 | 19.29 | 322 | -- | -- |
| 33.68 | 0.27 | 9.48 | -0.642 | 0.778 | -0.381 | 0.000548 | -- | -0.0332 | 6.65 | 19.3 | 318 | -- | -- |
| 33.63 | 0.27 | 9.48 | -0.65 | 0.777 | -0.415 | -- | -0.159 | -0.0325 | 6.64 | 19.29 | 318 | -- | -- |
| 33.68 | 0.27 | 9.48 | -0.636 | 0.78 | -0.384 | -- | -- | -0.0295 | 6.64 | 19.28 | 318 | -- | -- |
| 55.07 | 0.346 | 9.48 | -0.584 | -- | -0.474 | -- | -0.00972 | 0.023 | -- | 26.1 | 396 | -- | -- |
| 36.7 | 0.284 | 9.49 | -0.763 | 0.814 | -- | -0.00643 | -- | -0.0849 | 6.52 | -- | -- | -- | -- |
| 36.7 | 0.284 | 9.49 | -0.763 | 0.814 | -- | -- | -- | -0.0849 | 6.52 | -- | -- | -- | -- |
| 54.67 | 0.344 | 9.47 | -0.608 | -- | -0.508 | -- | -- | 0.0881 | -- | 25.91 | 391 | -- | -- |
| 43.2 | 0.306 | 9.47 | -- | 0.789 | -0.589 | -- | -- | 0.0256 | 6.82 | 19.2 | 378 | -- | -- |
| 71.17 | 0.394 | 9.51 | -0.743 | -- | -- | -- | -- | -0.0681 | -- | -- | -- | -- | -- |
| 52.05 | 0.337 | 9.47 | -- | 0.804 | -- | -- | -- | 8.67e-05 | 6.58 | -- | -- | -- | -- |
| 64.09 | 0.373 | 9.45 | -- | -- | -0.583 | -- | -- | 0.166 | -- | 26.25 | 405 | -- | -- |
| 85.73 | 0.432 | 9.49 | -- | -- | -- | -- | -- | 0.0143 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.79 | temperature | 20.0 | 270 | > th | dose independent | rect. | 19 | 14 |
| 2 | 31.81 | temperature | 20.0 | 720 | > th | dose independent | rect. | 21 | 4 |
| 3 | 31.82 | temperature | 20.0 | 270 | > th | dose independent | rect. | 21 | 12 |
| 28 | 32.57 | temperature | 20.0 | 270 | > th | dose independent | rect. | 4 | 21 |
| 32 | 32.66 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 23 | 11 |
| 48 | 32.88 | temperature | 20.0 | 90 | > th | dose independent | sin | 7 | NA |
| 50 | 32.89 | temperature | 20.0 | 270 | > th | dose independent | sin | 9 | NA |
| 52 | 32.90 | temperature | 20.0 | 10 | > th | dose independent | rect. | 21 | 13 |
| 68 | 32.98 | temperature | 20.0 | 90 | < th | dose independent | sin | 7 | NA |
| 80 | 33.02 | temperature | 20.0 | 270 | > th | dose independent | rect. | 5 | 1 |
| 87 | 33.05 | temperature | 20.0 | 270 | > th | dose independent | rect. | 13 | 21 |
| 95 | 33.08 | temperature | 20.0 | 270 | < th | dose independent | rect. | 21 | 14 |
| 96 | 33.09 | temperature | 20.0 | 270 | > th | dose independent | rect. | 3 | 6 |
| 99 | 33.10 | temperature | 20.0 | 10 | > th | dose independent | rect. | 19 | 15 |
| 103 | 33.11 | temperature | 15.0 | 10 | > th | dose dependent | sin | 7 | NA |
| 122 | 33.19 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 19 | 15 |
| 123 | 33.20 | temperature | 20.0 | 10 | > th | dose independent | sin | 7 | NA |
| 127 | 33.20 | temperature | 20.0 | 720 | > th | dose independent | rect. | 12 | 14 |
| 143 | 33.24 | temperature | 20.0 | 720 | < th | dose independent | rect. | 19 | 7 |
| 218 | 33.38 | temperature | 20.0 | 10 | > th | dose independent | rect. | 16 | 18 |
| 236 | 33.40 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 24 | 11 |
| 258 | 33.44 | temperature | 20.0 | 10 | < th | dose independent | sin | 6 | NA |
| 267 | 33.45 | temperature | 20.0 | 270 | < th | dose independent | rect. | 22 | 8 |
| 277 | 33.47 | temperature | 20.0 | 270 | < th | dose independent | rect. | 23 | 6 |
| 316 | 33.53 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 3 | 15 |
| 322 | 33.54 | temperature | 30.0 | 10 | < th | dose dependent | sin | 7 | NA |
| 361 | 33.59 | wind | 7.0 | 4320 | < th | dose independent | rect. | 19 | 1 |
| 379 | 33.61 | wind | 7.0 | 4320 | > th | dose independent | rect. | 19 | 1 |
| 396 | 33.63 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 5 | 13 |
| 397 | 33.63 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 5 | 13 |
| 401 | 33.63 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 5 | 13 |
| 413 | 33.65 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 23 | 21 |
| 415 | 33.65 | temperature | 20.0 | 270 | < th | dose dependent | sin | 8 | NA |
| 416 | 33.65 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 19 | 1 |
| 417 | 33.65 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 6 | 4 |
| 444 | 33.69 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 16 | 3 |
| 449 | 33.69 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 16 | 3 |
| 450 | 33.69 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 23 | 6 |
| 452 | 33.70 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 16 | 3 |
| 469 | 33.71 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 14 | 5 |
| 498 | 33.73 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 14 | 5 |
| 508 | 33.73 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 14 | 5 |
| 522 | 33.75 | temperature | 20.0 | 720 | > th | dose independent | sin | 15 | NA |
| 553 | 33.77 | wind | 1.0 | 4320 | > th | dose independent | rect. | 10 | 4 |
| 564 | 33.77 | temperature | 20.0 | 270 | > th | dose independent | rect. | 18 | 23 |
| 580 | 33.78 | wind | 3.0 | 4320 | < th | dose dependent | rect. | 10 | 1 |
| 596 | 33.80 | temperature | 20.0 | 720 | < th | dose independent | sin | 15 | NA |
| 604 | 33.80 | temperature | 20.0 | 270 | < th | dose independent | rect. | 6 | 23 |
| 611 | 33.81 | wind | 7.0 | 4320 | < th | dose independent | rect. | 17 | 6 |
| 634 | 33.82 | temperature | 20.0 | 10 | > th | dose independent | rect. | 15 | 23 |
| 639 | 33.82 | precipitation | 0.1 | 4320 | > th | dose dependent | sin | 0 | NA |
| 655 | 33.83 | temperature | 20.0 | 270 | < th | dose independent | rect. | 21 | 23 |
| 660 | 33.84 | temperature | 20.0 | 270 | > th | dose independent | no | NA | NA |
| 662 | 33.84 | wind | 1.0 | 4320 | < th | dose independent | rect. | 10 | 4 |
| 664 | 33.84 | wind | 7.0 | 4320 | > th | dose independent | rect. | 17 | 5 |
| 680 | 33.85 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 12 | 7 |
| 681 | 33.85 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 10 | 9 |
| 682 | 33.85 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 10 | 9 |
| 691 | 33.85 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 10 | 9 |
| 698 | 33.86 | temperature | 20.0 | 270 | < th | dose independent | no | NA | NA |
| 731 | 33.87 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 4 | 5 |
| 749 | 33.88 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 9 | 20 |
| 752 | 33.88 | temperature | 20.0 | 270 | < th | dose independent | rect. | 10 | 23 |
| 756 | 33.88 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 14 | 6 |
| 771 | 33.89 | temperature | 20.0 | 10 | < th | dose independent | rect. | 24 | 12 |
| 798 | 33.90 | wind | 7.0 | 4320 | < th | dose independent | rect. | 17 | 11 |
| 856 | 33.93 | temperature | 20.0 | 10 | < th | dose independent | rect. | 21 | 15 |
| 876 | 33.94 | atmosphere | 1000.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 879 | 33.94 | wind | 7.0 | 720 | < th | dose independent | rect. | 18 | 10 |
| 880 | 33.94 | wind | 7.0 | 4320 | > th | dose independent | rect. | 17 | 11 |
| 900 | 33.95 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 991 | 34.00 | wind | 1.0 | 4320 | > th | dose independent | rect. | 10 | 9 |
| 993 | 34.00 | wind | 1.0 | 4320 | > th | dose independent | rect. | 9 | 12 |