BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0505200 Os09g0505200|Os09g0505200
         (435 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G07220.1  | chr3:2297968-2299407 FORWARD LENGTH=321            169   2e-42
AT3G07260.1  | chr3:2309704-2310630 FORWARD LENGTH=252            166   3e-41

>AT3G07220.1 | chr3:2297968-2299407 FORWARD LENGTH=321
          Length = 320

 Score =  169 bits (429), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 89/142 (62%), Positives = 105/142 (73%), Gaps = 6/142 (4%)

Query: 72  MASA---GRNRGVGFAKLQGEDFEYFMQTYSIILGRDSKREKVDLDIS--GGDLTISRHH 126
           MA+A   G +  VGFAKLQGEDFEY+MQ+YSIILGR+SK+  VD+D+S  GG + ISR+H
Sbjct: 1   MATAVGGGSDVEVGFAKLQGEDFEYYMQSYSIILGRNSKKATVDVDLSSLGGGMNISRNH 60

Query: 127 AHIFYDFECKRFSLLVLGKCGCTVEGVLHLPGGSPIKLDSQDLLQIGHKKFYFLLPTRSI 186
           A IFYDF  +RFSL VLGK GC VEGVLHLPG   +KLDSQDLLQIG K+FYFLLP RSI
Sbjct: 61  ARIFYDFTRRRFSLEVLGKNGCLVEGVLHLPGNPNVKLDSQDLLQIGDKEFYFLLPVRSI 120

Query: 187 FGTSSN-QHGPSASAAFQPANN 207
            G     +H  S   +  P +N
Sbjct: 121 LGGPLGPRHHVSGQTSVVPYHN 142




 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 52/89 (58%), Gaps = 5/89 (5%)

Query: 312 ADNNKDQQEVLLKEEEYVLASIGIVISDLCGLKKMIPIEKLHSELVACYSATWPQRQVQM 371
            D   D Q+ L  EE+ V++S+  V+SDLCG  + +P+EKLHS ++  Y   W   +V+ 
Sbjct: 208 VDREADDQQFLQLEEKDVVSSVATVLSDLCGPGEWMPMEKLHSVILKEYGNVWHHSRVRR 267

Query: 372 HLAPE--AGSSAAGTECKPWLKLMYLLRK 398
           +L+ E  A   A G   KPW  L+ LLRK
Sbjct: 268 YLSQEDWAIPEAKG---KPWYGLLMLLRK 293



>AT3G07260.1 | chr3:2309704-2310630 FORWARD LENGTH=252
          Length = 251

 Score =  166 bits (419), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 81/122 (66%), Positives = 96/122 (78%), Gaps = 2/122 (1%)

Query: 69  ISVMASAGRNRGVGFAKLQGEDFEYFMQTYSIILGRDSKREKVDLDIS--GGDLTISRHH 126
           ++    +G +  VGFAKLQGEDFEY+MQ+YSIILGR+SK+  VD+D+S  GG + ISR+H
Sbjct: 1   MATAVGSGSDVEVGFAKLQGEDFEYYMQSYSIILGRNSKKSTVDVDLSSLGGGMNISRNH 60

Query: 127 AHIFYDFECKRFSLLVLGKCGCTVEGVLHLPGGSPIKLDSQDLLQIGHKKFYFLLPTRSI 186
           A IFYDF  +RFSL VLGK GC VEGVLHLPG   +KLDSQDLLQIG K+FYFLLP  SI
Sbjct: 61  ARIFYDFTRRRFSLEVLGKNGCFVEGVLHLPGNPNVKLDSQDLLQIGDKEFYFLLPVWSI 120

Query: 187 FG 188
            G
Sbjct: 121 LG 122



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.135    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,046,628
Number of extensions: 370397
Number of successful extensions: 844
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 841
Number of HSP's successfully gapped: 3
Length of query: 435
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 334
Effective length of database: 8,337,553
Effective search space: 2784742702
Effective search space used: 2784742702
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)