Os08g0528900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Transcriptional activator FHA1.
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Os08g0528900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Transcriptional activator FHA1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.85 | 0.22 | 12 | 0.79 | 0.462 | 0.325 | 0.114 | 0.0892 | 0.41 | 0.559 | 71.26 | 1293 | -- | -- |
| 21.77 | 0.217 | 12 | 0.781 | 0.453 | 0.332 | 0.083 | -- | 0.404 | 0.589 | 73 | 1298 | -- | -- |
| 21.88 | 0.218 | 12 | 0.783 | 0.456 | 0.325 | -- | 0.0824 | 0.403 | 0.625 | 72 | 1319 | -- | -- |
| 21.78 | 0.217 | 12 | 0.794 | 0.455 | 0.34 | -- | -- | 0.41 | 0.639 | 73 | 1312 | -- | -- |
| 29.69 | 0.255 | 12 | 0.775 | -- | 0.246 | -- | -0.178 | 0.379 | -- | 75 | 1626 | -- | -- |
| 25.79 | 0.238 | 12 | 0.734 | 0.408 | -- | 0.0459 | -- | 0.363 | 0.446 | -- | -- | -- | -- |
| 25.8 | 0.238 | 12 | 0.733 | 0.408 | -- | -- | -- | 0.363 | 0.478 | -- | -- | -- | -- |
| 29.34 | 0.253 | 12 | 0.772 | -- | 0.254 | -- | -- | 0.373 | -- | 75 | 1626 | -- | -- |
| 37.41 | 0.285 | 12 | -- | 0.426 | 0.372 | -- | -- | 0.39 | 0.375 | 74.18 | 7141 | -- | -- |
| 36.24 | 0.281 | 12 | 0.747 | -- | -- | -- | -- | 0.37 | -- | -- | -- | -- | -- |
| 39.95 | 0.296 | 12 | -- | 0.419 | -- | -- | -- | 0.281 | 0.566 | -- | -- | -- | -- |
| 39.53 | 0.293 | 12 | -- | -- | 0.65 | -- | -- | 0.249 | -- | 63.17 | 47520 | -- | -- |
| 50.95 | 0.333 | 12 | -- | -- | -- | -- | -- | 0.287 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.49 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 2 | 21.84 | humidity | 70 | 1440 | > th | dose dependent | rect. | 10 | 3 |
| 4 | 21.98 | humidity | 70 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 5 | 21.99 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 9 |
| 8 | 22.04 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 9 | 22.04 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 9 |
| 10 | 22.05 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 15 | 22.07 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 4 |
| 20 | 22.08 | humidity | 80 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 32 | 22.12 | humidity | 80 | 1440 | < th | dose independent | sin | 2 | NA |
| 37 | 22.12 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 4 |
| 38 | 22.12 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 10 |
| 44 | 22.15 | humidity | 80 | 1440 | > th | dose independent | sin | 2 | NA |
| 51 | 22.15 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 21 |
| 77 | 22.21 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 79 | 22.21 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 80 | 22.22 | humidity | 70 | 1440 | > th | dose independent | rect. | 8 | 11 |
| 89 | 22.23 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 9 |
| 105 | 22.24 | humidity | 70 | 1440 | > th | dose independent | no | NA | NA |
| 195 | 22.25 | humidity | 80 | 1440 | < th | dose dependent | rect. | 18 | 19 |
| 216 | 22.27 | humidity | 70 | 1440 | > th | dose independent | sin | 21 | NA |
| 220 | 22.27 | humidity | 90 | 1440 | < th | dose dependent | sin | 3 | NA |
| 279 | 22.31 | humidity | 90 | 1440 | < th | dose dependent | rect. | 2 | 13 |
| 297 | 22.32 | humidity | 80 | 1440 | < th | dose dependent | rect. | 15 | 21 |
| 301 | 22.33 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 12 |
| 315 | 22.33 | humidity | 90 | 1440 | < th | dose dependent | rect. | 2 | 18 |
| 324 | 22.34 | humidity | 70 | 1440 | < th | dose independent | rect. | 19 | 23 |
| 325 | 22.34 | humidity | 60 | 1440 | > th | dose dependent | sin | 1 | NA |
| 382 | 22.36 | humidity | 70 | 1440 | < th | dose independent | rect. | 15 | 22 |
| 404 | 22.37 | humidity | 70 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 455 | 22.39 | humidity | 70 | 1440 | < th | dose independent | no | NA | NA |
| 569 | 22.40 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 14 |
| 595 | 22.40 | humidity | 60 | 1440 | > th | dose dependent | rect. | 5 | 15 |
| 631 | 22.41 | humidity | 60 | 1440 | > th | dose dependent | rect. | 7 | 13 |
| 698 | 22.43 | temperature | 20 | 270 | > th | dose independent | rect. | 18 | 9 |
| 712 | 22.43 | humidity | 80 | 1440 | < th | dose dependent | no | NA | NA |
| 735 | 22.43 | humidity | 80 | 1440 | < th | dose dependent | rect. | 7 | 20 |
| 738 | 22.43 | humidity | 80 | 1440 | < th | dose dependent | rect. | 5 | 21 |
| 877 | 22.46 | humidity | 80 | 1440 | < th | dose dependent | sin | 9 | NA |