BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0528900 Os08g0528900|AK065800
(343 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G07220.1 | chr3:2297968-2299407 FORWARD LENGTH=321 384 e-107
AT3G07260.1 | chr3:2309704-2310630 FORWARD LENGTH=252 206 1e-53
>AT3G07220.1 | chr3:2297968-2299407 FORWARD LENGTH=321
Length = 320
Score = 384 bits (985), Expect = e-107, Method: Compositional matrix adjust.
Identities = 207/326 (63%), Positives = 236/326 (72%), Gaps = 16/326 (4%)
Query: 19 EVEAGFAKLQGEDFEYYMQTYSIMLGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFQR 78
+VE GFAKLQGEDFEYYMQ+YSI+LGRNSKK+TVDVDLSSLGGGMNISR+HARIFYDF R
Sbjct: 10 DVEVGFAKLQGEDFEYYMQSYSIILGRNSKKATVDVDLSSLGGGMNISRNHARIFYDFTR 69
Query: 79 RRFALDVIGKNGCLVEGVLHLPGNHPVKLDSQDLLQIGDKKFYFLLPTRSIFASAAAARH 138
RRF+L+V+GKNGCLVEGVLHLPGN VKLDSQDLLQIGDK+FYFLLP RSI RH
Sbjct: 70 RRFSLEVLGKNGCLVEGVLHLPGNPNVKLDSQDLLQIGDKEFYFLLPVRSILGGPLGPRH 129
Query: 139 XXX-XXXXXXXXSYVRTGRPRLSEFHDRSFEGDYGREGDEIGNGISESGGMRGKLIKRNK 197
+Y + RS E Y + ++ + E MRG
Sbjct: 130 HVSGQTSVVPYHNYQSGPGSGSGKKGVRSRE-LYEYDDEDDDDDDDEEDDMRG------- 181
Query: 198 KLSAESEMYGGHRINVEAIGTLGEDSRSEIRSRGDRDMDNQHILQAEEKDVVSSVATVLS 257
S + GH E + GE R E RS+ DR+ D+Q LQ EEKDVVSSVATVLS
Sbjct: 182 --SGKKTRRDGH----EVVYASGEKKR-EGRSKVDREADDQQFLQLEEKDVVSSVATVLS 234
Query: 258 DLCGPGEWMPMAKLHTELLEQFGNVWHHSRVRKYLSPEDWSPTETKGRPWYGLLALLRKY 317
DLCGPGEWMPM KLH+ +L+++GNVWHHSRVR+YLS EDW+ E KG+PWYGLL LLRKY
Sbjct: 235 DLCGPGEWMPMEKLHSVILKEYGNVWHHSRVRRYLSQEDWAIPEAKGKPWYGLLMLLRKY 294
Query: 318 PEHFVINTRSKGRVTSEFVSLVSLLS 343
PEHFVINTRSKGRVT EFVSLV+LLS
Sbjct: 295 PEHFVINTRSKGRVTLEFVSLVTLLS 320
>AT3G07260.1 | chr3:2309704-2310630 FORWARD LENGTH=252
Length = 251
Score = 206 bits (525), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 98/120 (81%), Positives = 106/120 (88%)
Query: 19 EVEAGFAKLQGEDFEYYMQTYSIMLGRNSKKSTVDVDLSSLGGGMNISRHHARIFYDFQR 78
+VE GFAKLQGEDFEYYMQ+YSI+LGRNSKKSTVDVDLSSLGGGMNISR+HARIFYDF R
Sbjct: 10 DVEVGFAKLQGEDFEYYMQSYSIILGRNSKKSTVDVDLSSLGGGMNISRNHARIFYDFTR 69
Query: 79 RRFALDVIGKNGCLVEGVLHLPGNHPVKLDSQDLLQIGDKKFYFLLPTRSIFASAAAARH 138
RRF+L+V+GKNGC VEGVLHLPGN VKLDSQDLLQIGDK+FYFLLP SI RH
Sbjct: 70 RRFSLEVLGKNGCFVEGVLHLPGNPNVKLDSQDLLQIGDKEFYFLLPVWSILGGPLGPRH 129
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.136 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,978,393
Number of extensions: 296313
Number of successful extensions: 761
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 761
Number of HSP's successfully gapped: 2
Length of query: 343
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 244
Effective length of database: 8,392,385
Effective search space: 2047741940
Effective search space used: 2047741940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)