BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0505000 Os09g0505000|Os09g0505000
(209 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0505000 Zinc finger, RING-type domain containing protein 175 3e-44
Os08g0527000 84 7e-17
Os01g0917900 Zinc finger, RING-type domain containing protein 70 9e-13
>Os09g0505000 Zinc finger, RING-type domain containing protein
Length = 209
Score = 175 bits (443), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 112/209 (53%), Positives = 112/209 (53%)
Query: 1 MPPPTRTRRGVTLAEQMAASSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVVVAAG 60
MPPPTRTRRGVTLAEQMAASS AVVVAAG
Sbjct: 1 MPPPTRTRRGVTLAEQMAASSNLRDLLKLRDNDDDDDDGGGQGGRRQPRPLPDAVVVAAG 60
Query: 61 RRRTLLXXXXXXXXXXXXXXPPTGVLEGHRPXXXXXXXXXXXXXXXXVSLMALLEQAERQ 120
RRRTLL PPTGVLEGHRP VSLMALLEQAERQ
Sbjct: 61 RRRTLLDVIRGVDDDDGHDHPPTGVLEGHRPATSTRTAAAGGARGGRVSLMALLEQAERQ 120
Query: 121 WTTAAAGXXXXXXXXXXXXXXXXXGTNKGFXXXXXXXXXXXXXXXXXXKAAAFIPCGHTF 180
WTTAAAG GTNKGF KAAAFIPCGHTF
Sbjct: 121 WTTAAAGDASRRRVADDHAAAAEAGTNKGFAGAAAGVGGRCCVCMARGKAAAFIPCGHTF 180
Query: 181 CRACARELRVGRGRCPLCNAAIHDVLNLF 209
CRACARELRVGRGRCPLCNAAIHDVLNLF
Sbjct: 181 CRACARELRVGRGRCPLCNAAIHDVLNLF 209
>Os08g0527000
Length = 263
Score = 84.0 bits (206), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 51/107 (47%), Gaps = 5/107 (4%)
Query: 108 VSLMALLEQAERQWTTAAAGXXXXXXXXXXXXXXXXXGTNKGFXXXXXXXXXXXXXX--- 164
VSLMALLEQ ERQW+ +
Sbjct: 157 VSLMALLEQTERQWSAGSGATVQQHLASPSAAASASVSAAAEDEAEAEAGKGAAGGGCCC 216
Query: 165 --XXXXKAAAFIPCGHTFCRACARELRVGRGRCPLCNAAIHDVLNLF 209
K AAFIPCGHTFCR CAREL GRGRCPLCNAAI DVL++F
Sbjct: 217 VCMARAKGAAFIPCGHTFCRTCARELLAGRGRCPLCNAAILDVLDIF 263
>Os01g0917900 Zinc finger, RING-type domain containing protein
Length = 313
Score = 70.5 bits (171), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 28/41 (68%), Positives = 33/41 (80%)
Query: 169 KAAAFIPCGHTFCRACARELRVGRGRCPLCNAAIHDVLNLF 209
K AAFIPCGHTFCR C+REL V RG CPLCN I ++L++F
Sbjct: 273 KGAAFIPCGHTFCRLCSRELWVSRGNCPLCNGFIQEILDIF 313
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.135 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,053,053
Number of extensions: 79237
Number of successful extensions: 614
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 611
Number of HSP's successfully gapped: 3
Length of query: 209
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 113
Effective length of database: 12,023,257
Effective search space: 1358628041
Effective search space used: 1358628041
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 154 (63.9 bits)