Os09g0505000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os09g0505000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 569.75 | 1.12 | 7.33 | 4.8 | 1.34 | -3.29 | -0.448 | 1.06 | 1.53 | 1.15 | 80.89 | 1348 | -- | -- |
| 571.13 | 1.11 | 7.34 | 4.7 | 1.37 | -3.22 | -0.365 | -- | 1.52 | 1.13 | 81.29 | 1337 | -- | -- |
| 570.39 | 1.11 | 7.33 | 4.82 | 1.36 | -3.31 | -- | 1 | 1.53 | 1.02 | 80.74 | 1338 | -- | -- |
| 571.63 | 1.11 | 7.34 | 4.72 | 1.37 | -3.23 | -- | -- | 1.52 | 1.02 | 81.26 | 1337 | -- | -- |
| 632.15 | 1.17 | 7.31 | 4.78 | -- | -3.07 | -- | 1.37 | 1.56 | -- | 83.21 | 1583 | -- | -- |
| 815.99 | 1.34 | 7.32 | 4.15 | 1.02 | -- | -0.961 | -- | 1.63 | 1.11 | -- | -- | -- | -- |
| 818.96 | 1.34 | 7.32 | 4.19 | 1.02 | -- | -- | -- | 1.63 | 0.627 | -- | -- | -- | -- |
| 635.34 | 1.17 | 7.32 | 4.64 | -- | -2.98 | -- | -- | 1.56 | -- | 83.77 | 1582 | -- | -- |
| 1098.49 | 1.54 | 7.4 | -- | 1.12 | -2.7 | -- | -- | 1.25 | 0.964 | 94 | 1465 | -- | -- |
| 884.28 | 1.39 | 7.3 | 4.23 | -- | -- | -- | -- | 1.65 | -- | -- | -- | -- | -- |
| 1281.42 | 1.67 | 7.42 | -- | 1.09 | -- | -- | -- | 1.17 | 0.812 | -- | -- | -- | -- |
| 1153.81 | 1.58 | 7.39 | -- | -- | -2.74 | -- | -- | 1.29 | -- | 94 | 1616 | -- | -- |
| 1355.15 | 1.72 | 7.41 | -- | -- | -- | -- | -- | 1.18 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 570.46 | humidity | 80 | 1440 | < th | dose dependent | rect. | 11 | 22 |
| 4 | 572.17 | humidity | 80 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 7 | 572.74 | humidity | 80 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 8 | 572.81 | humidity | 80 | 1440 | < th | dose dependent | rect. | 5 | 17 |
| 34 | 573.22 | humidity | 80 | 1440 | < th | dose dependent | rect. | 13 | 21 |
| 55 | 573.38 | humidity | 80 | 1440 | < th | dose dependent | no | NA | NA |
| 73 | 574.20 | humidity | 80 | 1440 | < th | dose dependent | sin | 19 | NA |
| 74 | 574.25 | humidity | 80 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 82 | 574.67 | humidity | 80 | 1440 | < th | dose dependent | rect. | 11 | 11 |
| 88 | 574.74 | humidity | 80 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 98 | 575.01 | humidity | 80 | 1440 | < th | dose dependent | rect. | 11 | 14 |
| 182 | 579.11 | humidity | 80 | 1440 | < th | dose dependent | rect. | 13 | 9 |
| 245 | 580.87 | humidity | 50 | 1440 | > th | dose dependent | sin | 21 | NA |
| 250 | 580.99 | humidity | 50 | 1440 | > th | dose dependent | rect. | 10 | 11 |
| 261 | 581.32 | humidity | 50 | 1440 | > th | dose dependent | rect. | 7 | 14 |
| 278 | 581.77 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 21 |
| 502 | 588.00 | humidity | 80 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 553 | 589.38 | humidity | 70 | 1440 | < th | dose independent | rect. | 17 | 21 |
| 564 | 589.85 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 23 |
| 610 | 591.65 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 12 |
| 611 | 591.65 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 14 |
| 613 | 591.66 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 18 |
| 614 | 591.66 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 20 |
| 656 | 592.92 | humidity | 70 | 1440 | < th | dose independent | sin | 15 | NA |
| 661 | 593.19 | humidity | 70 | 1440 | > th | dose independent | rect. | 6 | 15 |
| 662 | 593.19 | humidity | 70 | 1440 | > th | dose independent | rect. | 6 | 17 |
| 663 | 593.19 | humidity | 70 | 1440 | > th | dose independent | rect. | 6 | 23 |
| 668 | 593.20 | humidity | 70 | 1440 | > th | dose independent | rect. | 2 | 19 |
| 669 | 593.20 | humidity | 70 | 1440 | > th | dose independent | rect. | 6 | 21 |
| 671 | 593.21 | humidity | 70 | 1440 | > th | dose independent | rect. | 2 | 21 |
| 679 | 593.24 | humidity | 70 | 1440 | > th | dose independent | rect. | 4 | 17 |
| 680 | 593.24 | humidity | 70 | 1440 | > th | dose independent | rect. | 4 | 19 |
| 688 | 593.25 | humidity | 70 | 1440 | > th | dose independent | rect. | 4 | 23 |
| 689 | 593.25 | humidity | 70 | 1440 | > th | dose independent | rect. | 22 | 23 |
| 691 | 593.26 | humidity | 70 | 1440 | > th | dose independent | no | NA | NA |
| 763 | 593.58 | humidity | 70 | 1440 | > th | dose independent | sin | 18 | NA |
| 826 | 595.12 | humidity | 60 | 1440 | > th | dose independent | rect. | 12 | 6 |
| 828 | 595.18 | humidity | 70 | 1440 | < th | dose independent | rect. | 10 | 22 |
| 836 | 595.32 | humidity | 70 | 720 | > th | dose independent | sin | 12 | NA |
| 897 | 596.57 | humidity | 70 | 1440 | < th | dose independent | rect. | 10 | 10 |
| 960 | 597.46 | humidity | 50 | 1440 | > th | dose dependent | rect. | 15 | 2 |