BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0505000 Os09g0505000|Os09g0505000
(209 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G25030.1 | chr3:9122650-9123402 FORWARD LENGTH=251 72 2e-13
AT4G13100.2 | chr4:7636547-7639037 REVERSE LENGTH=266 70 6e-13
AT1G62370.1 | chr1:23072575-23073189 FORWARD LENGTH=205 70 9e-13
AT4G22250.1 | chr4:11767685-11768329 REVERSE LENGTH=215 67 5e-12
AT4G03965.1 | chr4:1889576-1890205 FORWARD LENGTH=210 65 2e-11
AT3G07120.1 | chr3:2254560-2255642 FORWARD LENGTH=361 56 2e-08
>AT3G25030.1 | chr3:9122650-9123402 FORWARD LENGTH=251
Length = 250
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 30/41 (73%), Positives = 33/41 (80%)
Query: 169 KAAAFIPCGHTFCRACARELRVGRGRCPLCNAAIHDVLNLF 209
K AAFIPCGHTFCR C+REL V RG CPLCN I +VL+LF
Sbjct: 210 KGAAFIPCGHTFCRLCSRELWVQRGNCPLCNTTILEVLDLF 250
>AT4G13100.2 | chr4:7636547-7639037 REVERSE LENGTH=266
Length = 265
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 30/41 (73%), Positives = 33/41 (80%)
Query: 169 KAAAFIPCGHTFCRACARELRVGRGRCPLCNAAIHDVLNLF 209
K AAFIPCGHTFCR C+REL V RG CPLCN AI VL++F
Sbjct: 225 KGAAFIPCGHTFCRLCSRELWVQRGNCPLCNTAILQVLDIF 265
>AT1G62370.1 | chr1:23072575-23073189 FORWARD LENGTH=205
Length = 204
Score = 70.1 bits (170), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 27/41 (65%), Positives = 34/41 (82%)
Query: 169 KAAAFIPCGHTFCRACARELRVGRGRCPLCNAAIHDVLNLF 209
K AAFIPCGHT+CR C+RE+ + RG CPLCN +I DVL+L+
Sbjct: 164 KGAAFIPCGHTYCRVCSREIWMNRGTCPLCNRSIFDVLDLY 204
>AT4G22250.1 | chr4:11767685-11768329 REVERSE LENGTH=215
Length = 214
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 27/41 (65%), Positives = 33/41 (80%)
Query: 169 KAAAFIPCGHTFCRACARELRVGRGRCPLCNAAIHDVLNLF 209
K AAFIPCGHTFCR C+REL + RG CPLCN I ++L++F
Sbjct: 174 KGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRPIIEILDIF 214
>AT4G03965.1 | chr4:1889576-1890205 FORWARD LENGTH=210
Length = 209
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 25/41 (60%), Positives = 33/41 (80%)
Query: 169 KAAAFIPCGHTFCRACARELRVGRGRCPLCNAAIHDVLNLF 209
K AAFIPCGHTFCR C+RE+ + RG CPLCN I ++L+++
Sbjct: 169 KGAAFIPCGHTFCRVCSREVWLNRGSCPLCNRPIIEILDIY 209
>AT3G07120.1 | chr3:2254560-2255642 FORWARD LENGTH=361
Length = 360
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 30/41 (73%)
Query: 169 KAAAFIPCGHTFCRACARELRVGRGRCPLCNAAIHDVLNLF 209
K A+F PCGHTFC+ C++EL +G CP+C++ + + L +F
Sbjct: 320 KGASFTPCGHTFCKLCSKELMAQKGHCPVCSSFVLEFLEIF 360
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.135 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,118,986
Number of extensions: 36405
Number of successful extensions: 423
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 427
Number of HSP's successfully gapped: 6
Length of query: 209
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 115
Effective length of database: 8,529,465
Effective search space: 980888475
Effective search space used: 980888475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 109 (46.6 bits)