Os01g0917900 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0917900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, RING-type domain containing protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	3.34	(0.0402)	R²	:	0.369
β₁	:	--	(--)	R²_dD	:	--	R²_D	:	--
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	2.01	(0.125)	R²_dE	:	0.366	R²_E	:	0.368
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	-0.0349	(0.0853)	R²_dN8	:	0.000377	R²_N8	:	0.0028
σ	:	0.754
deviance	:	262.24
__

_____

C
peak time of C	:	--
E
wheather	:	humidity
threshold	:	82.37
memory length	:	859
response mode	:	< th
dose dependency	:	dose dependent
G
type of G	:	rect.
peak or start time of G	:	17
open length of G	:	4.23

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
241.54	0.73	3.3	0.384	0.524	1.72	-0.761	3.68	0.0305	3.38	79.18	738	17.8	3.5
250.91	0.738	3.31	0.301	0.549	1.97	0.0908	--	0.0387	4.23	78.3	756	17.7	3.3
242.26	0.725	3.29	0.383	0.584	1.77	--	3.26	0.0721	4.18	79	738	17.7	3.56
249.13	0.735	3.29	0.17	0.598	2.02	--	--	0.0975	4.82	78.53	758	17.4	3.83
252.55	0.74	3.31	0.452	--	1.89	--	2.55	0.0178	--	83.86	775	17.6	3.59
339.55	0.864	3.37	0.251	1.11	--	0.352	--	-0.22	3.5	--	--	--	--
339.91	0.863	3.37	0.245	1.11	--	--	--	-0.222	3.43	--	--	--	--
261.13	0.753	3.32	0.21	--	1.98	--	--	-0.0394	--	83.6	853	17.2	4.17
249.61	0.736	3.31	--	0.562	2.08	--	--	0.0633	4.75	78.52	760	17.3	3.88
409.02	0.945	3.37	0.292	--	--	--	--	-0.193	--	--	--	--	--
341.49	0.864	3.38	--	1.11	--	--	--	-0.249	3.43	--	--	--	--
262.24	0.754	3.34	--	--	2.01	--	--	-0.0349	--	82.37	859	17	4.23
411.27	0.947	3.38	--	--	--	--	--	-0.225	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	242.81	humidity	80	720	< th	dose dependent	rect.	18	3
9	248.65	humidity	70	720	< th	dose independent	rect.	18	2
22	249.00	temperature	25	720	> th	dose dependent	rect.	18	5
31	251.88	temperature	25	720	> th	dose dependent	rect.	18	1
33	252.35	humidity	70	720	> th	dose independent	rect.	17	8
75	255.49	temperature	30	4320	> th	dose dependent	rect.	18	1
91	255.60	humidity	70	720	> th	dose independent	rect.	17	15
119	258.18	temperature	30	720	< th	dose independent	rect.	17	8
156	258.96	temperature	30	720	> th	dose independent	rect.	18	1
212	260.74	humidity	70	720	> th	dose independent	sin	12	NA
226	260.98	radiation	1	720	> th	dose independent	rect.	18	11
232	261.35	radiation	1	720	> th	dose independent	rect.	18	1
246	261.73	humidity	50	720	> th	dose dependent	rect.	17	7
252	262.24	humidity	70	720	< th	dose independent	sin	12	NA
285	263.88	temperature	30	4320	< th	dose independent	rect.	18	8
305	264.18	humidity	80	720	> th	dose independent	rect.	19	3
307	264.23	temperature	30	1440	< th	dose independent	rect.	17	10
317	264.45	temperature	30	1440	< th	dose independent	rect.	17	5
324	264.55	temperature	30	1440	< th	dose independent	rect.	17	15
336	265.28	humidity	70	720	> th	dose dependent	rect.	19	2
355	265.64	radiation	1	1440	> th	dose dependent	rect.	17	13
371	266.78	radiation	20	1440	< th	dose dependent	rect.	17	13
424	267.57	radiation	40	1440	< th	dose dependent	rect.	17	10
463	267.77	radiation	1	720	> th	dose dependent	rect.	18	11
493	268.25	radiation	1	1440	> th	dose dependent	rect.	17	2
500	268.25	radiation	40	1440	< th	dose dependent	rect.	17	8
513	268.51	temperature	30	1440	> th	dose dependent	sin	11	NA
530	268.83	temperature	30	1440	< th	dose independent	sin	11	NA
536	268.96	temperature	30	1440	> th	dose independent	sin	12	NA
658	269.96	radiation	40	1440	< th	dose dependent	rect.	17	2
662	269.97	humidity	50	4320	< th	dose dependent	rect.	16	1
694	270.13	radiation	20	1440	< th	dose dependent	rect.	17	5
829	271.02	humidity	50	1440	< th	dose independent	rect.	16	1
959	271.51	temperature	30	1440	> th	dose dependent	no	NA	NA