BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0917900 Os01g0917900|AK109460
(313 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0917900 Zinc finger, RING-type domain containing protein 142 2e-34
Os08g0527000 75 9e-14
Os09g0505000 Zinc finger, RING-type domain containing protein 70 2e-12
>Os01g0917900 Zinc finger, RING-type domain containing protein
Length = 313
Score = 142 bits (359), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/206 (44%), Positives = 91/206 (44%)
Query: 1 MERRPELRRTMTLSEQLSAPDQAIRDFLKIPHXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
MERRPELRRTMTLSEQLSAPDQAIRDFLKIPH
Sbjct: 1 MERRPELRRTMTLSEQLSAPDQAIRDFLKIPHDGLGGGDGEGGRIPAAAGASGGGGGVGG 60
Query: 61 MINWKPXXXXXXXXXAASAWMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKYNYSPG 120
MINWKP AASAWM KYNYSPG
Sbjct: 61 MINWKPLRDRLRLRRAASAWMSASPKPAASNSGGGGGGGATLSSSNSGSNHSNKYNYSPG 120
Query: 121 EXXXXXXXXXXXXXXXXXXXXXXXATSTRLGATAFSSGSRRAAVDGGGHANXXXXXXXXX 180
E ATSTRLGATAFSSGSRRAAVDGGGHAN
Sbjct: 121 EAAAAFSRTFSRTRSLRPTPTFSRATSTRLGATAFSSGSRRAAVDGGGHANEDDDEDHTD 180
Query: 181 XXXXXXXXXXXXXXAPAAQMSLMALL 206
APAAQMSLMALL
Sbjct: 181 DDDDDDEEEQGKDDAPAAQMSLMALL 206
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 41/41 (100%), Positives = 41/41 (100%)
Query: 273 KGAAFIPCGHTFCRLCSRELWVSRGNCPLCNGFIQEILDIF 313
KGAAFIPCGHTFCRLCSRELWVSRGNCPLCNGFIQEILDIF
Sbjct: 273 KGAAFIPCGHTFCRLCSRELWVSRGNCPLCNGFIQEILDIF 313
>Os08g0527000
Length = 263
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 30/41 (73%), Positives = 33/41 (80%)
Query: 273 KGAAFIPCGHTFCRLCSRELWVSRGNCPLCNGFIQEILDIF 313
KGAAFIPCGHTFCR C+REL RG CPLCN I ++LDIF
Sbjct: 223 KGAAFIPCGHTFCRTCARELLAGRGRCPLCNAAILDVLDIF 263
>Os09g0505000 Zinc finger, RING-type domain containing protein
Length = 209
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 28/41 (68%), Positives = 33/41 (80%)
Query: 273 KGAAFIPCGHTFCRLCSRELWVSRGNCPLCNGFIQEILDIF 313
K AAFIPCGHTFCR C+REL V RG CPLCN I ++L++F
Sbjct: 169 KAAAFIPCGHTFCRACARELRVGRGRCPLCNAAIHDVLNLF 209
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.134 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,470,532
Number of extensions: 82605
Number of successful extensions: 603
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 599
Number of HSP's successfully gapped: 4
Length of query: 313
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 212
Effective length of database: 11,762,187
Effective search space: 2493583644
Effective search space used: 2493583644
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 156 (64.7 bits)