BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0917900 Os01g0917900|AK109460
         (313 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G25030.1  | chr3:9122650-9123402 FORWARD LENGTH=251             87   1e-17
AT4G13100.2  | chr4:7636547-7639037 REVERSE LENGTH=266             85   4e-17
AT4G22250.1  | chr4:11767685-11768329 REVERSE LENGTH=215           81   9e-16
AT4G03965.1  | chr4:1889576-1890205 FORWARD LENGTH=210             79   3e-15
AT1G62370.1  | chr1:23072575-23073189 FORWARD LENGTH=205           74   7e-14
AT3G07120.1  | chr3:2254560-2255642 FORWARD LENGTH=361             69   3e-12

>AT3G25030.1 | chr3:9122650-9123402 FORWARD LENGTH=251
          Length = 250

 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 35/41 (85%), Positives = 37/41 (90%)

Query: 273 KGAAFIPCGHTFCRLCSRELWVSRGNCPLCNGFIQEILDIF 313
           KGAAFIPCGHTFCRLCSRELWV RGNCPLCN  I E+LD+F
Sbjct: 210 KGAAFIPCGHTFCRLCSRELWVQRGNCPLCNTTILEVLDLF 250



>AT4G13100.2 | chr4:7636547-7639037 REVERSE LENGTH=266
          Length = 265

 Score = 85.1 bits (209), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 35/41 (85%), Positives = 37/41 (90%)

Query: 273 KGAAFIPCGHTFCRLCSRELWVSRGNCPLCNGFIQEILDIF 313
           KGAAFIPCGHTFCRLCSRELWV RGNCPLCN  I ++LDIF
Sbjct: 225 KGAAFIPCGHTFCRLCSRELWVQRGNCPLCNTAILQVLDIF 265



>AT4G22250.1 | chr4:11767685-11768329 REVERSE LENGTH=215
          Length = 214

 Score = 80.9 bits (198), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 34/41 (82%), Positives = 38/41 (92%)

Query: 273 KGAAFIPCGHTFCRLCSRELWVSRGNCPLCNGFIQEILDIF 313
           KGAAFIPCGHTFCR+CSRELW++RG+CPLCN  I EILDIF
Sbjct: 174 KGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRPIIEILDIF 214



>AT4G03965.1 | chr4:1889576-1890205 FORWARD LENGTH=210
          Length = 209

 Score = 79.0 bits (193), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 32/41 (78%), Positives = 38/41 (92%)

Query: 273 KGAAFIPCGHTFCRLCSRELWVSRGNCPLCNGFIQEILDIF 313
           KGAAFIPCGHTFCR+CSRE+W++RG+CPLCN  I EILDI+
Sbjct: 169 KGAAFIPCGHTFCRVCSREVWLNRGSCPLCNRPIIEILDIY 209



>AT1G62370.1 | chr1:23072575-23073189 FORWARD LENGTH=205
          Length = 204

 Score = 74.3 bits (181), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 28/41 (68%), Positives = 37/41 (90%)

Query: 273 KGAAFIPCGHTFCRLCSRELWVSRGNCPLCNGFIQEILDIF 313
           KGAAFIPCGHT+CR+CSRE+W++RG CPLCN  I ++LD++
Sbjct: 164 KGAAFIPCGHTYCRVCSREIWMNRGTCPLCNRSIFDVLDLY 204



>AT3G07120.1 | chr3:2254560-2255642 FORWARD LENGTH=361
          Length = 360

 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 25/41 (60%), Positives = 34/41 (82%)

Query: 273 KGAAFIPCGHTFCRLCSRELWVSRGNCPLCNGFIQEILDIF 313
           KGA+F PCGHTFC+LCS+EL   +G+CP+C+ F+ E L+IF
Sbjct: 320 KGASFTPCGHTFCKLCSKELMAQKGHCPVCSSFVLEFLEIF 360



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.134    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,578,354
Number of extensions: 44555
Number of successful extensions: 483
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 484
Number of HSP's successfully gapped: 6
Length of query: 313
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 215
Effective length of database: 8,419,801
Effective search space: 1810257215
Effective search space used: 1810257215
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 111 (47.4 bits)