BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0502100 Os09g0502100|J033141N18
         (401 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0502100  Conserved hypothetical protein                      746   0.0  
Os08g0525700  Conserved hypothetical protein                       68   1e-11

>Os09g0502100 Conserved hypothetical protein
          Length = 401

 Score =  746 bits (1925), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/401 (91%), Positives = 368/401 (91%)

Query: 1   MLLYDFLLADVTSFDYMVSVTEICCSFLAGDRVPAISSTCGNEPAVGTEDVSVSSTSDPA 60
           MLLYDFLLADVTSFDYMVSVTEICCSFLAGDRVPAISSTCGNEPAVGTEDVSVSSTSDPA
Sbjct: 1   MLLYDFLLADVTSFDYMVSVTEICCSFLAGDRVPAISSTCGNEPAVGTEDVSVSSTSDPA 60

Query: 61  KNISLHDASVNNSRQEDGEPTSGINFVPSEVFLPAEFSTMPTSQDINALKNDGNEKTPLE 120
           KNISLHDASVNNSRQEDGEPTSGINFVPSEVFLPAEFSTMPTSQDINALKNDGNEKTPLE
Sbjct: 61  KNISLHDASVNNSRQEDGEPTSGINFVPSEVFLPAEFSTMPTSQDINALKNDGNEKTPLE 120

Query: 121 DISTKDMTASLSEDNVEEKKETEGTSVKEMNSILKADNVEEEKLTDDTSAERNAMQHIDD 180
           DISTKDMTASLSEDNVEEKKETEGTSVKEMNSILKADNVEEEKLTDDTSAERNAMQHIDD
Sbjct: 121 DISTKDMTASLSEDNVEEKKETEGTSVKEMNSILKADNVEEEKLTDDTSAERNAMQHIDD 180

Query: 181 AEKKQAADTVSRETSALQNIEERENVEGTGAKGVPAVGSLENADAENQTEDTSAKTECKS 240
           AEKKQAADTVSRETSALQNIEERENVEGTGAKGVPAVGSLENADAENQTEDTSAKTECKS
Sbjct: 181 AEKKQAADTVSRETSALQNIEERENVEGTGAKGVPAVGSLENADAENQTEDTSAKTECKS 240

Query: 241 DNADNKKQSYDTSTEEMNAKNQAQDTSSKEMNTIQNTSNAEEKNQTEDPAVQEGNKQKEG 300
           DNADNKKQSYDTSTEEMNAKNQAQDTSSKEMNTIQNTSNAEEKNQTEDPAVQEGNKQKEG
Sbjct: 241 DNADNKKQSYDTSTEEMNAKNQAQDTSSKEMNTIQNTSNAEEKNQTEDPAVQEGNKQKEG 300

Query: 301 ISPTVAKQSSERVHVPLKVLLXXXXXXXXXXXXXXXXRVLSFRRRVXXXXXXXXXXXXXX 360
           ISPTVAKQSSERVHVPLKVLL                RVLSFRRRV              
Sbjct: 301 ISPTVAKQSSERVHVPLKVLLAEASVETKEKKTTAKERVLSFRRRVSKDDSSSAKSGSPK 360

Query: 361 XXXDDNKFWSSPARLPENNAEKKSKARKQPWMPFICCHSVH 401
              DDNKFWSSPARLPENNAEKKSKARKQPWMPFICCHSVH
Sbjct: 361 PGADDNKFWSSPARLPENNAEKKSKARKQPWMPFICCHSVH 401



>Os08g0525700 Conserved hypothetical protein
          Length = 1067

 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 89/309 (28%), Positives = 125/309 (40%), Gaps = 45/309 (14%)

Query: 110  KNDGNEKTPLEDISTKDMTASLSEDNVEEKKETEGTSVKEMNSILKADNVEEEK-----L 164
            +N G+E T   +   + +    + DNVE+K   + TS         ADNVEEE       
Sbjct: 785  QNHGDEVTSGTNTHEESVILVHTTDNVEKKMNKDLTS-------EPADNVEEEVQSEDIA 837

Query: 165  TDDTSAERNAMQHIDDAEKKQAADTVSRETSALQNIEERENVEGTGAKGVPAVGSLENAD 224
            TD TS E + +   D AE K+    V+ + +A             G   VP        D
Sbjct: 838  TDPTSHESSTLHITDGAESKKQDAKVAADLAA-------------GKIDVPRSAD----D 880

Query: 225  AENQTEDTSAKTE--CKSDNAD--NKKQSYDTSTEEMNAKNQAQDTSSKEMNTIQNTSNA 280
            AE Q  + +  T+   K D+    N  Q  D + ++      A D    + +   +T +A
Sbjct: 881  AEEQKHEATVSTDDDLKGDDPSESNSPQIIDGAGDKEQDAETAADPPPGKTDAPPSTDDA 940

Query: 281  EEKNQTEDPAVQEGN-------KQKEGISPTVAKQSSERVHVPLKVLLXXXXXXXXXXXX 333
            EE    E+     G        + KE I+      +S++ HV LK LL            
Sbjct: 941  EETKPKEEELETVGTVVDDPKEEDKEEIADKEVIVNSDKNHVSLKSLLSEKAAETKESKK 1000

Query: 334  -XXXXRVLSFRRRVXXXXXXXXXXXX-XXXXXDDNKFWSSPARLPENNAEKKSKARKQPW 391
                 RVLSFRRRV                     + W+SPARLP    EKK K +KQ W
Sbjct: 1001 PSTKDRVLSFRRRVSKDGGSPAKPGSPKAAVSGQQQDWNSPARLP---VEKKPKGKKQQW 1057

Query: 392  MPFICCHSV 400
            +PFICC S+
Sbjct: 1058 VPFICCPSM 1066



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.304    0.120    0.325 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,540,235
Number of extensions: 445435
Number of successful extensions: 1944
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1920
Number of HSP's successfully gapped: 2
Length of query: 401
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 298
Effective length of database: 11,657,759
Effective search space: 3474012182
Effective search space used: 3474012182
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 157 (65.1 bits)