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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0502100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.63 (0.0657) R2 : 0.456
β1 : -3.91 (0.379) R2dD : 0.502 R2D : -0.0821
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.68 (0.243) R2dE : 0.518 R2E : 0.148
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -7.84 (1.83) R2dD*E : 0.0951 R2D*E : -0.361
γ1 : -0.747 (0.137) R2dN8 : 0.0705 R2N8 : -0.0556
σ : 0.99
deviance : 451.44
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 24.76
memory length : 862
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 8.69
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
428.2 0.972 4.57 -3.54 0.557 3.38 -1.72 -6.24 -0.5 22.8 25.47 861 6.83 --
434.38 0.971 4.46 -2.51 0.64 2.7 -2.18 -- -0.293 23 25.4 869 7.24 --
438.84 0.976 4.56 -3.66 0.643 3.43 -- -7.92 -0.403 0.382 25.83 842 6.52 --
451.5 0.99 4.45 -2.4 0.687 2.64 -- -- -0.274 23.3 25.48 857 6.86 --
451.44 0.99 4.63 -3.91 -- 3.68 -- -7.84 -0.747 -- 24.76 862 8.69 --
618.91 1.17 4.44 -1.95 1.35 -- -1.11 -- -0.258 0.634 -- -- -- --
623.89 1.17 4.44 -1.91 1.35 -- -- -- -0.254 0.856 -- -- -- --
469.04 1.01 4.46 -2.51 -- 3.03 -- -- -0.418 -- 24.76 842 8.35 --
600.59 1.14 4.38 -- 0.695 2.23 -- -- -0.0246 24 25.4 860 7.35 --
738.35 1.27 4.42 -1.86 -- -- -- -- -0.229 -- -- -- -- --
719.75 1.25 4.39 -- 1.32 -- -- -- -0.0419 0.792 -- -- -- --
626.37 1.17 4.39 -- -- 2.68 -- -- -0.103 -- 25 803 7.43 --
829.34 1.34 4.37 -- -- -- -- -- -0.023 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 420.55 temperature 25 720 > th dose dependent rect. 17 7
4 422.41 humidity 90 720 < th dose dependent rect. 17 6
5 422.81 temperature 25 720 > th dose dependent rect. 17 15
55 438.65 humidity 80 720 < th dose dependent rect. 17 15
65 439.52 temperature 25 720 > th dose dependent sin 12 NA
81 444.13 humidity 80 720 < th dose independent rect. 17 4
91 448.19 humidity 70 720 < th dose independent rect. 18 13
92 448.23 humidity 70 720 < th dose independent rect. 18 2
147 452.04 humidity 60 720 > th dose dependent rect. 17 6
198 455.18 humidity 70 720 > th dose independent sin 11 NA
215 457.18 humidity 70 1440 > th dose independent rect. 18 7
225 457.43 humidity 80 1440 < th dose dependent sin 13 NA
226 457.44 humidity 70 1440 > th dose independent rect. 18 5
234 457.60 humidity 70 1440 > th dose independent rect. 18 2
272 458.84 humidity 70 720 > th dose independent rect. 16 17
297 460.09 humidity 50 1440 > th dose dependent rect. 18 1
309 460.69 humidity 70 1440 < th dose independent sin 12 NA
334 461.80 temperature 30 1440 < th dose independent sin 14 NA
348 462.11 temperature 30 1440 > th dose independent sin 14 NA
351 462.17 temperature 30 1440 < th dose independent rect. 9 18
355 462.21 temperature 30 1440 < th dose independent rect. 9 15
359 462.25 temperature 30 1440 < th dose independent rect. 9 10
363 462.28 temperature 30 1440 < th dose independent rect. 9 22
411 462.92 temperature 30 1440 < th dose independent rect. 17 22
440 463.33 temperature 30 1440 < th dose independent rect. 15 23
460 463.80 temperature 30 1440 < th dose independent rect. 6 21
468 463.84 temperature 30 1440 > th dose independent rect. 9 10
477 463.84 temperature 30 1440 < th dose independent rect. 6 18
493 463.88 temperature 30 1440 < th dose independent rect. 6 13
498 463.88 temperature 30 1440 < th dose independent rect. 13 23
502 463.89 temperature 30 1440 < th dose independent rect. 21 22
505 463.90 temperature 30 1440 < th dose independent rect. 2 22
535 463.94 temperature 30 1440 < th dose independent no NA NA
542 463.95 temperature 30 1440 < th dose independent rect. 2 17
587 464.03 temperature 30 1440 > th dose independent rect. 15 4
626 464.24 temperature 30 1440 < th dose independent rect. 16 11
633 464.31 temperature 30 1440 < th dose independent rect. 16 8
655 464.49 temperature 30 1440 < th dose independent rect. 16 4
680 464.57 temperature 30 1440 < th dose independent rect. 15 16
687 464.61 temperature 25 1440 > th dose dependent rect. 6 19
743 465.12 temperature 30 1440 > th dose independent rect. 17 22
760 465.21 temperature 30 1440 > th dose independent rect. 15 23
780 465.32 temperature 25 1440 > th dose dependent no NA NA
840 465.64 temperature 25 1440 > th dose dependent rect. 20 23
861 465.69 radiation 1 720 > th dose independent rect. 17 13
868 465.73 temperature 30 1440 > th dose independent rect. 13 23
870 465.74 temperature 30 1440 > th dose independent no NA NA
990 465.87 radiation 1 720 > th dose independent rect. 17 2