Os08g0525700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0525700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 89.35 | 0.444 | 11.3 | 0.206 | 2.02 | 2.19 | 0.947 | -9.28 | 0.0692 | 22.3 | 0.1187 | 723 | -- | -- |
| 98.76 | 0.466 | 11.2 | 0.275 | 2 | -0.436 | 1.02 | -- | 0.0378 | 22.2 | 0.1187 | 723 | -- | -- |
| 92.76 | 0.449 | 11.3 | 0.15 | 2.01 | 2.39 | -- | -9.65 | 0.0727 | 22.2 | 0.1347 | 750 | -- | -- |
| 102.48 | 0.471 | 11.2 | 0.257 | 2 | -0.261 | -- | -- | 0.0308 | 22.2 | 0.4584 | 644 | -- | -- |
| 333.15 | 0.85 | 11.3 | 0.157 | -- | 2.28 | -- | -9.33 | 0.0578 | -- | 0.5 | 1171 | -- | -- |
| 99.01 | 0.466 | 11.2 | 0.267 | 1.99 | -- | 0.999 | -- | 0.0395 | 22.2 | -- | -- | -- | -- |
| 102.95 | 0.475 | 11.2 | 0.229 | 1.99 | -- | -- | -- | 0.0379 | 22.1 | -- | -- | -- | -- |
| 334.77 | 0.852 | 11.2 | 0.182 | -- | 1.17 | -- | -- | 0.0597 | -- | 1.864 | 621 | -- | -- |
| 94.8 | 0.453 | 11.3 | -- | 1.98 | -0.475 | -- | -- | -0.2 | 22.1 | 0.1337 | 47520 | -- | -- |
| 343.34 | 0.866 | 11.2 | 0.256 | -- | -- | -- | -- | 0.0412 | -- | -- | -- | -- | -- |
| 104.32 | 0.478 | 11.2 | -- | 1.99 | -- | -- | -- | 0.0124 | 22.2 | -- | -- | -- | -- |
| 330.98 | 0.847 | 11.3 | -- | -- | -0.577 | -- | -- | -0.246 | -- | 0.1552 | 47520 | -- | -- |
| 345.07 | 0.867 | 11.2 | -- | -- | -- | -- | -- | 0.0128 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 82.03 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 4 | 83.10 | temperature | 15.0 | 14400 | < th | dose independent | sin | 23 | NA |
| 5 | 83.10 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 5 | 13 |
| 8 | 83.16 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 5 | 19 |
| 11 | 83.18 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 7 | 19 |
| 12 | 83.21 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 6 | 12 |
| 14 | 83.23 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 8 | 16 |
| 28 | 83.31 | temperature | 15.0 | 14400 | > th | dose independent | sin | 22 | NA |
| 33 | 83.35 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 5 | 17 |
| 45 | 83.42 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 19 | 5 |
| 52 | 83.47 | temperature | 15.0 | 14400 | < th | dose independent | sin | 18 | NA |
| 58 | 83.49 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 68 | 83.55 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 16 | 9 |
| 74 | 83.58 | temperature | 15.0 | 14400 | > th | dose independent | sin | 19 | NA |
| 76 | 83.58 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 18 | 7 |
| 144 | 83.97 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 20 | 3 |
| 145 | 83.97 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 15 | 10 |
| 170 | 84.14 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 189 | 84.24 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 8 | 10 |
| 193 | 84.25 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 6 | 4 |
| 213 | 84.37 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 5 | 6 |
| 217 | 84.38 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 232 | 84.43 | temperature | 15.0 | 270 | > th | dose independent | rect. | 24 | 14 |
| 242 | 84.49 | temperature | 15.0 | 270 | > th | dose independent | rect. | 23 | 16 |
| 249 | 84.52 | temperature | 15.0 | 720 | > th | dose independent | rect. | 19 | 18 |
| 265 | 84.57 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 2 | 6 |
| 275 | 84.62 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 24 | 23 |
| 290 | 84.69 | temperature | 15.0 | 14400 | < th | dose dependent | rect. | 4 | 17 |
| 299 | 84.74 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 10 | 23 |
| 303 | 84.75 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 21 | 23 |
| 307 | 84.80 | temperature | 15.0 | 14400 | < th | dose independent | no | NA | NA |
| 322 | 84.88 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 14 | 23 |
| 344 | 84.98 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 7 | 4 |
| 358 | 85.02 | temperature | 15.0 | 14400 | < th | dose dependent | sin | 23 | NA |
| 381 | 85.14 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 385 | 85.15 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 8 | 23 |
| 386 | 85.15 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 8 | 23 |
| 420 | 85.26 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 1 | 11 |
| 426 | 85.28 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 12 | 18 |
| 490 | 85.46 | humidity | 50.0 | 43200 | < th | dose dependent | sin | 9 | NA |
| 501 | 85.47 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 24 | 9 |
| 527 | 85.54 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 10 | 19 |
| 535 | 85.55 | temperature | 15.0 | 14400 | < th | dose dependent | rect. | 9 | 7 |
| 541 | 85.56 | temperature | 15.0 | 14400 | < th | dose dependent | rect. | 7 | 17 |
| 549 | 85.58 | humidity | 70.0 | 43200 | > th | dose dependent | sin | 15 | NA |
| 563 | 85.61 | temperature | 15.0 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 567 | 85.61 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 18 | 18 |
| 570 | 85.62 | temperature | 15.0 | 14400 | < th | dose dependent | rect. | 9 | 14 |
| 573 | 85.63 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 24 | 18 |
| 605 | 85.67 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 7 | 18 |
| 610 | 85.69 | humidity | 70.0 | 720 | > th | dose independent | rect. | 19 | 1 |
| 632 | 85.72 | temperature | 15.0 | 14400 | < th | dose dependent | rect. | 12 | 12 |
| 637 | 85.73 | temperature | 15.0 | 14400 | < th | dose dependent | rect. | 17 | 6 |
| 649 | 85.76 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 10 | 19 |
| 665 | 85.79 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 24 | 17 |
| 667 | 85.79 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 16 | 23 |
| 672 | 85.79 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 16 | 23 |
| 673 | 85.80 | temperature | 15.0 | 720 | > th | dose independent | rect. | 1 | 20 |
| 684 | 85.81 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 11 | 17 |
| 696 | 85.82 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 20 | 21 |
| 706 | 85.84 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 3 | 9 |
| 714 | 85.85 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 722 | 85.86 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 729 | 85.87 | humidity | 70.0 | 270 | > th | dose dependent | rect. | 6 | 6 |
| 738 | 85.88 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 23 | 19 |
| 752 | 85.90 | temperature | 15.0 | 14400 | < th | dose dependent | rect. | 11 | 2 |
| 753 | 85.90 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 7 | 3 |
| 788 | 85.95 | radiation | 40.0 | 90 | < th | dose independent | rect. | 7 | 18 |
| 810 | 85.98 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 18 | 2 |
| 823 | 86.00 | temperature | 15.0 | 14400 | < th | dose independent | rect. | 11 | 6 |
| 836 | 86.02 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 12 | 14 |
| 840 | 86.02 | temperature | 15.0 | 14400 | < th | dose dependent | rect. | 5 | 5 |
| 847 | 86.03 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 1 | 5 |
| 871 | 86.06 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 6 | NA |
| 888 | 86.07 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 16 | 23 |
| 903 | 86.09 | humidity | 70.0 | 43200 | > th | dose dependent | no | NA | NA |
| 957 | 86.15 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 7 | 5 |