BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0525700 Os08g0525700|AK069638
(1067 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0525700 Conserved hypothetical protein 1848 0.0
Os09g0502100 Conserved hypothetical protein 77 9e-14
>Os08g0525700 Conserved hypothetical protein
Length = 1067
Score = 1848 bits (4787), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 936/1067 (87%), Positives = 936/1067 (87%)
Query: 1 MESGAHKSRXXXXXXXXXXXXXXXXXXXXXNHMVCHLCGYQYPNAHPSAKQRRAHRKNCG 60
MESGAHKSR NHMVCHLCGYQYPNAHPSAKQRRAHRKNCG
Sbjct: 1 MESGAHKSRGAAAAGGGGGGEGASGGGGGGNHMVCHLCGYQYPNAHPSAKQRRAHRKNCG 60
Query: 61 NXXXXXXXXXXXXXXVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVL 120
N V VL
Sbjct: 61 NPSSPSPTAAAAHAAVEEGDGKRLLLLRDDGEEAAAGGGGGGGDVGDGASAVAADSGGVL 120
Query: 121 PGSAREVGNVADDDGNAERSSSPPHVSEVQVGLSKCTEDCVVIGDHIPPSGNDSKASGTE 180
PGSAREVGNVADDDGNAERSSSPPHVSEVQVGLSKCTEDCVVIGDHIPPSGNDSKASGTE
Sbjct: 121 PGSAREVGNVADDDGNAERSSSPPHVSEVQVGLSKCTEDCVVIGDHIPPSGNDSKASGTE 180
Query: 181 NDEIQSGVVTRLTENVPHLEDGHHSESAVSSDQCMGSTSCLVPEHGDGARLSSEFSADEI 240
NDEIQSGVVTRLTENVPHLEDGHHSESAVSSDQCMGSTSCLVPEHGDGARLSSEFSADEI
Sbjct: 181 NDEIQSGVVTRLTENVPHLEDGHHSESAVSSDQCMGSTSCLVPEHGDGARLSSEFSADEI 240
Query: 241 NKLSVMSLETVTGLSKDGIGNNEDDFSGVERPKAVEEDRSVNDSNVVSKEQIPCEETVSS 300
NKLSVMSLETVTGLSKDGIGNNEDDFSGVERPKAVEEDRSVNDSNVVSKEQIPCEETVSS
Sbjct: 241 NKLSVMSLETVTGLSKDGIGNNEDDFSGVERPKAVEEDRSVNDSNVVSKEQIPCEETVSS 300
Query: 301 MEQSEVMFTIGNNEDDLSCVERPKAVEEDRLVNDSNVVSKEQIPCKETVSSMEQSEVMFT 360
MEQSEVMFTIGNNEDDLSCVERPKAVEEDRLVNDSNVVSKEQIPCKETVSSMEQSEVMFT
Sbjct: 301 MEQSEVMFTIGNNEDDLSCVERPKAVEEDRLVNDSNVVSKEQIPCKETVSSMEQSEVMFT 360
Query: 361 NSVDHVSSSTKEPVNLLEDKMSCIEKHVCLDETSSNDLFQLASGGSHSEASGIDKPRHQA 420
NSVDHVSSSTKEPVNLLEDKMSCIEKHVCLDETSSNDLFQLASGGSHSEASGIDKPRHQA
Sbjct: 361 NSVDHVSSSTKEPVNLLEDKMSCIEKHVCLDETSSNDLFQLASGGSHSEASGIDKPRHQA 420
Query: 421 DCASLTPDQLVIPKEMDIDEGLHCTDADVGIKTLSSAVGHADEDITAVNLSKNVCSPHLT 480
DCASLTPDQLVIPKEMDIDEGLHCTDADVGIKTLSSAVGHADEDITAVNLSKNVCSPHLT
Sbjct: 421 DCASLTPDQLVIPKEMDIDEGLHCTDADVGIKTLSSAVGHADEDITAVNLSKNVCSPHLT 480
Query: 481 VGDDIQDSVRQTIDITPMPPQVDLAEVSTSSTSHEIDKVSSKDGIDERNPNVNLTSDEVN 540
VGDDIQDSVRQTIDITPMPPQVDLAEVSTSSTSHEIDKVSSKDGIDERNPNVNLTSDEVN
Sbjct: 481 VGDDIQDSVRQTIDITPMPPQVDLAEVSTSSTSHEIDKVSSKDGIDERNPNVNLTSDEVN 540
Query: 541 EVHGIDVEEIPHIEDIAAYNDYQEPNTVRGTRDFEEDTQNEEIIAEASSHNITAVQSTCN 600
EVHGIDVEEIPHIEDIAAYNDYQEPNTVRGTRDFEEDTQNEEIIAEASSHNITAVQSTCN
Sbjct: 541 EVHGIDVEEIPHIEDIAAYNDYQEPNTVRGTRDFEEDTQNEEIIAEASSHNITAVQSTCN 600
Query: 601 VEEKEQIEEFDSNSSCNKIHEISSRGVEETKLTDVNVETADEINVASSLENVEEKQSNRE 660
VEEKEQIEEFDSNSSCNKIHEISSRGVEETKLTDVNVETADEINVASSLENVEEKQSNRE
Sbjct: 601 VEEKEQIEEFDSNSSCNKIHEISSRGVEETKLTDVNVETADEINVASSLENVEEKQSNRE 660
Query: 661 TIADPSVEIDVANLPSSLELSKLDVETSTYHTAYEANAVNAMENVEEMKQKEEIAVAPXX 720
TIADPSVEIDVANLPSSLELSKLDVETSTYHTAYEANAVNAMENVEEMKQKEEIAVAP
Sbjct: 661 TIADPSVEIDVANLPSSLELSKLDVETSTYHTAYEANAVNAMENVEEMKQKEEIAVAPTS 720
Query: 721 XXXXXXXXXXDDQKQSEELSVGPSSDEITVPHGEFSVKEKTEETVSDPTSNKTDMVSTSG 780
DDQKQSEELSVGPSSDEITVPHGEFSVKEKTEETVSDPTSNKTDMVSTSG
Sbjct: 721 HINTISSTTNDDQKQSEELSVGPSSDEITVPHGEFSVKEKTEETVSDPTSNKTDMVSTSG 780
Query: 781 GVEEQNHGDEVTSGTNTHEESVILVHTTDNVEKKMNKDLTSEPADNVEEEVQSEDIATDP 840
GVEEQNHGDEVTSGTNTHEESVILVHTTDNVEKKMNKDLTSEPADNVEEEVQSEDIATDP
Sbjct: 781 GVEEQNHGDEVTSGTNTHEESVILVHTTDNVEKKMNKDLTSEPADNVEEEVQSEDIATDP 840
Query: 841 TSHESSTLHITDGAESKKQDAKVAADLAAGKIDVPRSADDAEEQKHEATVSTDDDLKGDD 900
TSHESSTLHITDGAESKKQDAKVAADLAAGKIDVPRSADDAEEQKHEATVSTDDDLKGDD
Sbjct: 841 TSHESSTLHITDGAESKKQDAKVAADLAAGKIDVPRSADDAEEQKHEATVSTDDDLKGDD 900
Query: 901 PSESNSPQIIDGAGDKEQDAETAADPPPGKTDAPPSTDDAXXXXXXXXXXXXVGTXXXXX 960
PSESNSPQIIDGAGDKEQDAETAADPPPGKTDAPPSTDDA VGT
Sbjct: 901 PSESNSPQIIDGAGDKEQDAETAADPPPGKTDAPPSTDDAEETKPKEEELETVGTVVDDP 960
Query: 961 XXXXXXXXXXXXXIVNSDKNHVSLKSLLXXXXXXXXXXXXPSTKDRVLSFRRRVSKDGGS 1020
IVNSDKNHVSLKSLL PSTKDRVLSFRRRVSKDGGS
Sbjct: 961 KEEDKEEIADKEVIVNSDKNHVSLKSLLSEKAAETKESKKPSTKDRVLSFRRRVSKDGGS 1020
Query: 1021 PAKPGSPKAAVSGQQQDWNSPARLPVEKKPKGKKQQWVPFICCPSMS 1067
PAKPGSPKAAVSGQQQDWNSPARLPVEKKPKGKKQQWVPFICCPSMS
Sbjct: 1021 PAKPGSPKAAVSGQQQDWNSPARLPVEKKPKGKKQQWVPFICCPSMS 1067
>Os09g0502100 Conserved hypothetical protein
Length = 401
Score = 76.6 bits (187), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 47/93 (50%), Positives = 57/93 (61%), Gaps = 5/93 (5%)
Query: 977 SDKNHVSLKSLLXXXXXXXXXXXXPSTKDRVLSFRRRVSKDGGSPAKPGSPKAAVSGQQQ 1036
S++ HV LK LL + K+RVLSFRRRVSKD S AK GSPK + +
Sbjct: 310 SERVHVPLKVLLAEASVETKEKKT-TAKERVLSFRRRVSKDDSSSAKSGSPKPG-ADDNK 367
Query: 1037 DWNSPARLP---VEKKPKGKKQQWVPFICCPSM 1066
W+SPARLP EKK K +KQ W+PFICC S+
Sbjct: 368 FWSSPARLPENNAEKKSKARKQPWMPFICCHSV 400
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.304 0.123 0.339
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 33,549,805
Number of extensions: 1407064
Number of successful extensions: 3885
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 3850
Number of HSP's successfully gapped: 3
Length of query: 1067
Length of database: 17,035,801
Length adjustment: 111
Effective length of query: 956
Effective length of database: 11,240,047
Effective search space: 10745484932
Effective search space used: 10745484932
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 161 (66.6 bits)