BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0501100 Os09g0501100|AK063752
(150 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0501100 Similar to 60S ribosomal protein L32A 273 4e-74
Os09g0502000 Similar to 60S ribosomal protein L32A 255 7e-69
Os08g0524600 Ribosomal protein L32e family protein 239 8e-64
AK119175 238 9e-64
Os09g0501700 Ribosomal protein L32e family protein 164 2e-41
AF140494 92 1e-19
>Os09g0501100 Similar to 60S ribosomal protein L32A
Length = 150
Score = 273 bits (697), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 133/150 (88%), Positives = 133/150 (88%)
Query: 1 LLPSXXXXLASPQEFAKMVVPLLTXXXXXXXXXXXXXPHSDRYIGLKTSWRRPKGIDSRV 60
LLPS LASPQEFAKMVVPLLT PHSDRYIGLKTSWRRPKGIDSRV
Sbjct: 1 LLPSRRRRLASPQEFAKMVVPLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRV 60
Query: 61 RRKFKGCTLMPNIGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVST 120
RRKFKGCTLMPNIGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVST
Sbjct: 61 RRKFKGCTLMPNIGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVST 120
Query: 121 RKRKEIVERAAQLDIVVTNKLARLRSQEDE 150
RKRKEIVERAAQLDIVVTNKLARLRSQEDE
Sbjct: 121 RKRKEIVERAAQLDIVVTNKLARLRSQEDE 150
>Os09g0502000 Similar to 60S ribosomal protein L32A
Length = 140
Score = 255 bits (652), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 123/139 (88%), Positives = 124/139 (89%)
Query: 12 PQEFAKMVVPLLTXXXXXXXXXXXXXPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMP 71
PQ FAKM VPLLT PHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMP
Sbjct: 2 PQGFAKMAVPLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMP 61
Query: 72 NIGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTRKRKEIVERAA 131
NIGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVST+KRKEIVERAA
Sbjct: 62 NIGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEIVERAA 121
Query: 132 QLDIVVTNKLARLRSQEDE 150
QLDIVVTNKLARLRSQEDE
Sbjct: 122 QLDIVVTNKLARLRSQEDE 140
>Os08g0524600 Ribosomal protein L32e family protein
Length = 151
Score = 239 bits (609), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 120/150 (80%), Positives = 123/150 (82%), Gaps = 1/150 (0%)
Query: 1 LLPSXXXXLASPQEFAKMVVPLLTXXXXXXXXXXXXXPHSDRYIGLKTSWRRPKGIDSRV 60
LLP L P +M VPLLT PHSDRY+ LK SWRRPKGIDSRV
Sbjct: 3 LLPPNSS-LRFPLRSEEMAVPLLTKKIVKKRVKQFKRPHSDRYLCLKPSWRRPKGIDSRV 61
Query: 61 RRKFKGCTLMPNIGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVST 120
RRKFKGCTLMPNIGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVST
Sbjct: 62 RRKFKGCTLMPNIGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVST 121
Query: 121 RKRKEIVERAAQLDIVVTNKLARLRSQEDE 150
+KRKEIVERAAQLDIVVTNKLARLRSQEDE
Sbjct: 122 KKRKEIVERAAQLDIVVTNKLARLRSQEDE 151
>AK119175
Length = 155
Score = 238 bits (608), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 120/150 (80%), Positives = 123/150 (82%), Gaps = 1/150 (0%)
Query: 1 LLPSXXXXLASPQEFAKMVVPLLTXXXXXXXXXXXXXPHSDRYIGLKTSWRRPKGIDSRV 60
LLP L P +M VPLLT PHSDRY+ LK SWRRPKGIDSRV
Sbjct: 7 LLPPNSS-LRFPLRSEEMAVPLLTKKIVKKRVKQFKRPHSDRYLCLKPSWRRPKGIDSRV 65
Query: 61 RRKFKGCTLMPNIGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVST 120
RRKFKGCTLMPNIGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVST
Sbjct: 66 RRKFKGCTLMPNIGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVST 125
Query: 121 RKRKEIVERAAQLDIVVTNKLARLRSQEDE 150
+KRKEIVERAAQLDIVVTNKLARLRSQEDE
Sbjct: 126 KKRKEIVERAAQLDIVVTNKLARLRSQEDE 155
>Os09g0501700 Ribosomal protein L32e family protein
Length = 121
Score = 164 bits (416), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 78/93 (83%), Positives = 79/93 (84%)
Query: 16 AKMVVPLLTXXXXXXXXXXXXXPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGY 75
+KM VPLLT PHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGY
Sbjct: 25 SKMAVPLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGY 84
Query: 76 GSDKKTRHYLPNKFKKFVVHNVSELELLMMHNR 108
GSDKKTRHYLPNKFKKFVVHNVSELELLMMHNR
Sbjct: 85 GSDKKTRHYLPNKFKKFVVHNVSELELLMMHNR 117
>AF140494
Length = 113
Score = 92.0 bits (227), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/68 (64%), Positives = 48/68 (70%), Gaps = 2/68 (2%)
Query: 16 AKMVVPLLTXXXXXXXXXXXXXPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPN--I 73
+KM VPLLT PHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPN I
Sbjct: 9 SKMAVPLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNYWI 68
Query: 74 GYGSDKKT 81
+G + +
Sbjct: 69 WFGQEDQA 76
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.134 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,111,141
Number of extensions: 143372
Number of successful extensions: 263
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 263
Number of HSP's successfully gapped: 6
Length of query: 150
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 58
Effective length of database: 12,232,113
Effective search space: 709462554
Effective search space used: 709462554
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 151 (62.8 bits)