Os09g0501100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 60S ribosomal protein L32A.
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Os09g0501100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 60S ribosomal protein L32A.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 131.68 | 0.539 | 6.43 | 0.797 | 0.925 | -2.27 | -0.17 | 1.47 | -0.159 | 14.2 | 15.34 | 316 | -- | -- |
| 133.61 | 0.538 | 6.45 | 0.621 | 0.854 | -2.12 | -0.136 | -- | -0.21 | 14 | 15.41 | 344 | -- | -- |
| 131.74 | 0.535 | 6.43 | 0.779 | 0.917 | -2.3 | -- | 1.35 | -0.165 | 14.2 | 15.09 | 325 | -- | -- |
| 132.96 | 0.537 | 6.46 | 0.559 | 0.905 | -2.33 | -- | -- | -0.223 | 14.2 | 13.06 | 334 | -- | -- |
| 141.17 | 0.553 | 6.43 | 0.869 | -- | -2.17 | -- | 1.29 | -0.157 | -- | 4.745 | 861 | -- | -- |
| 190.9 | 0.648 | 6.52 | 0.0562 | 0.643 | -- | -0.0208 | -- | -0.559 | 11.1 | -- | -- | -- | -- |
| 190.9 | 0.647 | 6.52 | 0.0554 | 0.643 | -- | -- | -- | -0.559 | 11.1 | -- | -- | -- | -- |
| 142.55 | 0.556 | 6.46 | 0.616 | -- | -2.14 | -- | -- | -0.225 | -- | 14.79 | 859 | -- | -- |
| 140.35 | 0.552 | 6.48 | -- | 0.844 | -2.06 | -- | -- | -0.318 | 14 | 12.94 | 334 | -- | -- |
| 216.67 | 0.688 | 6.54 | 0.0404 | -- | -- | -- | -- | -0.564 | -- | -- | -- | -- | -- |
| 190.98 | 0.646 | 6.52 | -- | 0.642 | -- | -- | -- | -0.565 | 11.1 | -- | -- | -- | -- |
| 151.56 | 0.573 | 6.48 | -- | -- | -1.83 | -- | -- | -0.327 | -- | 15.54 | 847 | -- | -- |
| 216.72 | 0.687 | 6.54 | -- | -- | -- | -- | -- | -0.569 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 126.48 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 3 | 128.16 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 5 | 128.22 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 6 | 128.23 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 7 | 128.32 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 10 | 128.52 | temperature | 20 | 720 | > th | dose dependent | sin | 9 | NA |
| 14 | 129.09 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 18 |
| 21 | 129.45 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 20 |
| 28 | 129.78 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 18 |
| 29 | 129.82 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 79 | 130.67 | temperature | 30 | 720 | < th | dose dependent | sin | 10 | NA |
| 81 | 130.70 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 124 | 131.39 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 127 | 131.41 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 12 |
| 189 | 132.14 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 12 |
| 191 | 132.18 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 192 | 132.18 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 220 | 132.46 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 9 |
| 227 | 132.50 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 239 | 132.59 | temperature | 10 | 4320 | > th | dose dependent | rect. | 17 | 9 |
| 242 | 132.60 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 243 | 132.61 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 248 | 132.63 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 256 | 132.69 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 264 | 132.74 | temperature | 15 | 1440 | > th | dose dependent | rect. | 17 | 12 |
| 271 | 132.78 | temperature | 30 | 4320 | < th | dose dependent | rect. | 19 | 7 |
| 273 | 132.79 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 5 |
| 279 | 132.81 | temperature | 10 | 4320 | > th | dose dependent | rect. | 19 | 7 |
| 282 | 132.82 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 365 | 133.05 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 377 | 133.10 | temperature | 10 | 4320 | > th | dose dependent | rect. | 17 | 5 |
| 385 | 133.13 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 401 | 133.17 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 476 | 133.33 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 485 | 133.36 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 487 | 133.36 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 516 | 133.43 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 4 |
| 557 | 133.50 | temperature | 10 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 562 | 133.50 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 584 | 133.54 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 10 |
| 596 | 133.56 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 2 |
| 610 | 133.58 | temperature | 10 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 614 | 133.59 | temperature | 10 | 4320 | > th | dose dependent | sin | 14 | NA |
| 638 | 133.64 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 10 |
| 716 | 133.77 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 750 | 133.82 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 836 | 133.95 | temperature | 15 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 845 | 133.97 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 888 | 134.02 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |