BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0499000 Os09g0499000|AK060116
         (259 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0499000  Conserved hypothetical protein                      257   5e-69
Os08g0516900  Conserved hypothetical protein                       66   3e-11

>Os09g0499000 Conserved hypothetical protein
          Length = 259

 Score =  257 bits (657), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 155/259 (59%), Positives = 155/259 (59%)

Query: 1   MSTAVADVPPAAAYGFPGSAKRGKPEEVVVLMGKRRNEGFFIXXXXXXXXVLTEXXXXXX 60
           MSTAVADVPPAAAYGFPGSAKRGKPEEVVVLMGKRRNEGFFI        VLTE      
Sbjct: 1   MSTAVADVPPAAAYGFPGSAKRGKPEEVVVLMGKRRNEGFFIEEEEEEEEVLTESSSIGA 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXKLKAEDEQVGLGCLDALEESLPIKRGLSNFYAGK 120
                                     KLKAEDEQVGLGCLDALEESLPIKRGLSNFYAGK
Sbjct: 61  PSPASSSIGENSGEEEGGDDEEEVESKLKAEDEQVGLGCLDALEESLPIKRGLSNFYAGK 120

Query: 121 SKSFXXXXXXXXXXXXXXXXXXXXXXXFNKRRRILATWSRRASCSSXXXXXXXXXXXXXD 180
           SKSF                       FNKRRRILATWSRRASCSS             D
Sbjct: 121 SKSFTSLAEATASPAAAANELAKPENPFNKRRRILATWSRRASCSSLATATYLPPLLAPD 180

Query: 181 HAVAXXXXXXXXXXXXXXXXRQHRGKNGGRRESAAXXXXXXXXXXXXHTQMGGMVRRNGT 240
           HAVA                RQHRGKNGGRRESAA            HTQMGGMVRRNGT
Sbjct: 181 HAVAEGDEGEEEDDDSDDDERQHRGKNGGRRESAAPPLPLPPPRLTLHTQMGGMVRRNGT 240

Query: 241 FRSPRSLSLSDLQNSGGSC 259
           FRSPRSLSLSDLQNSGGSC
Sbjct: 241 FRSPRSLSLSDLQNSGGSC 259



>Os08g0516900 Conserved hypothetical protein
          Length = 261

 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/84 (48%), Positives = 46/84 (54%), Gaps = 4/84 (4%)

Query: 101 DALEESLPIKRGLSNFYAGKSKSFXXXXXXXXXXXXXXXXXXXXXXXFNKRRRILATWS- 159
           ++LE++LPIKRGLSNFYAGKSKSF                       FNKRRR+LA WS 
Sbjct: 109 ESLEDALPIKRGLSNFYAGKSKSF--TSLAEAAAKAAAKEIAKPENPFNKRRRVLAAWSR 166

Query: 160 RRASCSSXXXXXXXXXXXXXDHAV 183
           RRASCSS             DHAV
Sbjct: 167 RRASCSS-LATTYLPPLLAPDHAV 189



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.132    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,789,575
Number of extensions: 140261
Number of successful extensions: 293
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 287
Number of HSP's successfully gapped: 3
Length of query: 259
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 160
Effective length of database: 11,866,615
Effective search space: 1898658400
Effective search space used: 1898658400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 155 (64.3 bits)