Os09g0499000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0499000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52.74 | 0.341 | 13.1 | 0.339 | 0.648 | 0.837 | 1.03 | -1.09 | 0.348 | 18.4 | 20.8 | 10 | -- | -- |
| 55.87 | 0.348 | 13.1 | 0.358 | 0.663 | 1.07 | 1.25 | -- | 0.359 | 16.2 | 13.08 | 9 | -- | -- |
| 55.21 | 0.346 | 13.1 | 0.334 | 0.657 | 0.868 | -- | -0.97 | 0.353 | 18.2 | 21.64 | 9 | -- | -- |
| 60.05 | 0.361 | 13.1 | 0.363 | 0.655 | 0.847 | -- | -- | 0.357 | 18.1 | 20 | 9 | -- | -- |
| 75.18 | 0.404 | 13.1 | 0.296 | -- | 0.849 | -- | -0.794 | 0.339 | -- | 11.32 | 4 | -- | -- |
| 72.17 | 0.398 | 13.1 | 0.325 | 1.11 | -- | -0.37 | -- | 0.344 | 21.6 | -- | -- | -- | -- |
| 72.66 | 0.399 | 13.1 | 0.34 | 1.11 | -- | -- | -- | 0.345 | 21.6 | -- | -- | -- | -- |
| 78.05 | 0.411 | 13.1 | 0.323 | -- | 0.828 | -- | -- | 0.359 | -- | 7.565 | 4 | -- | -- |
| 63.2 | 0.37 | 13.1 | -- | 0.625 | 0.889 | -- | -- | 0.328 | 17.5 | 12.65 | 9 | -- | -- |
| 145.91 | 0.564 | 13.1 | 0.348 | -- | -- | -- | -- | 0.343 | -- | -- | -- | -- | -- |
| 75.71 | 0.407 | 13.1 | -- | 1.11 | -- | -- | -- | 0.307 | 21.6 | -- | -- | -- | -- |
| 80.79 | 0.419 | 13.1 | -- | -- | 0.831 | -- | -- | 0.323 | -- | 7.74 | 4 | -- | -- |
| 149.12 | 0.57 | 13.1 | -- | -- | -- | -- | -- | 0.304 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 50.74 | radiation | 20 | 10 | < th | dose dependent | rect. | 6 | 23 |
| 2 | 52.59 | radiation | 20 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 3 | 52.84 | radiation | 20 | 10 | < th | dose dependent | no | NA | NA |
| 4 | 52.90 | radiation | 20 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 5 | 52.93 | radiation | 20 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 6 | 52.97 | radiation | 20 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 10 | 54.00 | radiation | 20 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 14 | 54.24 | radiation | 10 | 10 | > th | dose independent | rect. | 9 | 23 |
| 18 | 54.41 | radiation | 20 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 28 | 55.11 | radiation | 10 | 10 | < th | dose independent | rect. | 6 | 23 |
| 30 | 55.15 | radiation | 20 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 50 | 56.22 | radiation | 10 | 10 | > th | dose independent | sin | 21 | NA |
| 63 | 56.47 | radiation | 20 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 81 | 56.72 | radiation | 10 | 10 | > th | dose independent | rect. | 9 | 9 |
| 95 | 56.73 | radiation | 20 | 10 | < th | dose independent | rect. | 21 | 23 |
| 117 | 56.90 | radiation | 20 | 10 | < th | dose dependent | rect. | 8 | 12 |
| 133 | 57.12 | radiation | 20 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 162 | 57.64 | radiation | 10 | 10 | > th | dose independent | rect. | 7 | 11 |
| 182 | 57.69 | radiation | 20 | 10 | < th | dose independent | no | NA | NA |
| 184 | 57.71 | radiation | 10 | 10 | > th | dose independent | no | NA | NA |
| 264 | 57.73 | radiation | 20 | 10 | < th | dose independent | rect. | 11 | 23 |
| 269 | 57.78 | radiation | 20 | 10 | < th | dose independent | rect. | 15 | 23 |
| 270 | 57.79 | radiation | 20 | 10 | < th | dose independent | rect. | 13 | 23 |
| 306 | 58.06 | radiation | 10 | 10 | > th | dose independent | rect. | 17 | 23 |
| 307 | 58.06 | radiation | 20 | 10 | < th | dose independent | rect. | 17 | 23 |
| 331 | 58.22 | radiation | 20 | 10 | < th | dose independent | rect. | 23 | 23 |
| 343 | 58.32 | humidity | 60 | 14400 | > th | dose independent | rect. | 21 | 10 |
| 437 | 58.89 | radiation | 10 | 10 | < th | dose independent | rect. | 7 | 13 |
| 448 | 58.93 | radiation | 20 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 477 | 59.13 | radiation | 20 | 720 | < th | dose dependent | rect. | 11 | 16 |
| 497 | 59.23 | radiation | 20 | 10 | < th | dose dependent | sin | 2 | NA |
| 501 | 59.25 | radiation | 40 | 720 | < th | dose dependent | rect. | 13 | 6 |
| 504 | 59.28 | radiation | 20 | 10 | < th | dose independent | rect. | 1 | 23 |
| 528 | 59.45 | radiation | 20 | 10 | < th | dose independent | rect. | 23 | 21 |
| 534 | 59.50 | radiation | 20 | 10 | < th | dose dependent | sin | 20 | NA |
| 548 | 59.54 | radiation | 20 | 720 | < th | dose dependent | rect. | 9 | 18 |
| 641 | 59.59 | radiation | 1 | 30 | > th | dose dependent | rect. | 9 | 23 |
| 668 | 59.73 | radiation | 40 | 720 | < th | dose dependent | rect. | 15 | 3 |
| 676 | 59.75 | radiation | 10 | 10 | > th | dose independent | rect. | 15 | 23 |
| 780 | 60.00 | radiation | 10 | 720 | > th | dose independent | rect. | 9 | 7 |
| 796 | 60.05 | radiation | 40 | 720 | < th | dose dependent | rect. | 15 | 10 |
| 820 | 60.07 | radiation | 1 | 30 | > th | dose dependent | rect. | 7 | 23 |
| 826 | 60.09 | radiation | 20 | 10 | < th | dose independent | sin | 4 | NA |
| 828 | 60.09 | radiation | 20 | 720 | < th | dose dependent | rect. | 11 | 9 |
| 878 | 60.25 | radiation | 10 | 720 | < th | dose independent | rect. | 13 | 14 |
| 882 | 60.26 | radiation | 20 | 10 | < th | dose independent | rect. | 3 | 23 |
| 909 | 60.32 | radiation | 20 | 10 | < th | dose independent | rect. | 1 | 14 |