Os08g0516900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0516900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 57.99 | 0.358 | 14.4 | 0.425 | 0.641 | -0.703 | -0.0467 | 1.1 | -0.275 | 9.42 | 25.3 | 245 | -- | -- |
| 58.31 | 0.356 | 14.4 | 0.288 | 0.661 | -0.602 | -0.0622 | -- | -0.309 | 9.31 | 25.3 | 210 | -- | -- |
| 57.99 | 0.355 | 14.4 | 0.424 | 0.643 | -0.703 | -- | 1.11 | -0.275 | 9.41 | 25.3 | 240 | -- | -- |
| 58.31 | 0.356 | 14.4 | 0.288 | 0.662 | -0.597 | -- | -- | -0.31 | 9.29 | 25.3 | 211 | -- | -- |
| 72.77 | 0.397 | 14.3 | 0.763 | -- | -1.09 | -- | 2.45 | -0.15 | -- | 24.5 | 577 | -- | -- |
| 64.1 | 0.375 | 14.4 | 0.187 | 0.786 | -- | 0.193 | -- | -0.348 | 8.06 | -- | -- | -- | -- |
| 64.21 | 0.375 | 14.4 | 0.193 | 0.785 | -- | -- | -- | -0.348 | 8.09 | -- | -- | -- | -- |
| 75.09 | 0.404 | 14.4 | 0.364 | -- | -0.892 | -- | -- | -0.258 | -- | 24.5 | 558 | -- | -- |
| 60.33 | 0.362 | 14.4 | -- | 0.702 | -0.553 | -- | -- | -0.346 | 9.13 | 25.5 | 133 | -- | -- |
| 98.01 | 0.463 | 14.4 | 0.2 | -- | -- | -- | -- | -0.338 | -- | -- | -- | -- | -- |
| 65.19 | 0.378 | 14.4 | -- | 0.786 | -- | -- | -- | -0.369 | 8.07 | -- | -- | -- | -- |
| 78.48 | 0.413 | 14.4 | -- | -- | -0.833 | -- | -- | -0.306 | -- | 24.6 | 534 | -- | -- |
| 99.06 | 0.465 | 14.4 | -- | -- | -- | -- | -- | -0.36 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 52.32 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 12 | 6 |
| 6 | 52.95 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 12 | 12 |
| 8 | 53.02 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 12 | 2 |
| 34 | 53.78 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 12 | 19 |
| 37 | 53.84 | temperature | 25.0 | 90 | > th | dose independent | rect. | 12 | 5 |
| 55 | 54.05 | temperature | 25.0 | 270 | > th | dose independent | rect. | 12 | 2 |
| 57 | 54.08 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 12 | 16 |
| 103 | 54.52 | temperature | 25.0 | 30 | > th | dose independent | rect. | 12 | 10 |
| 138 | 54.85 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 7 | 13 |
| 139 | 54.88 | radiation | 1.0 | 30 | > th | dose independent | rect. | 12 | 7 |
| 180 | 55.13 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 4 | 11 |
| 195 | 55.23 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 19 | 21 |
| 198 | 55.29 | humidity | 90.0 | 10 | < th | dose independent | rect. | 12 | 6 |
| 214 | 55.31 | humidity | 90.0 | 30 | < th | dose independent | rect. | 12 | 19 |
| 234 | 55.42 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 12 | 6 |
| 286 | 55.65 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 12 | 19 |
| 326 | 55.75 | humidity | 90.0 | 30 | < th | dose independent | rect. | 12 | 12 |
| 329 | 55.76 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 15 | 21 |
| 331 | 55.77 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 12 | 3 |
| 333 | 55.78 | temperature | 30.0 | 90 | < th | dose independent | rect. | 7 | 5 |
| 336 | 55.78 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 2 | 14 |
| 350 | 55.80 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 12 | 19 |
| 358 | 55.84 | humidity | 80.0 | 270 | < th | dose independent | rect. | 12 | 2 |
| 373 | 55.86 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 12 | 6 |
| 413 | 55.92 | radiation | 40.0 | 30 | < th | dose dependent | sin | 14 | NA |
| 423 | 55.94 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 12 | 19 |
| 449 | 56.00 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 5 | 13 |
| 454 | 56.01 | temperature | 30.0 | 10 | < th | dose independent | rect. | 18 | 18 |
| 460 | 56.03 | wind | 7.0 | 30 | < th | dose independent | rect. | 12 | 6 |
| 461 | 56.03 | temperature | 30.0 | 720 | < th | dose independent | rect. | 24 | 10 |
| 464 | 56.05 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 12 | 6 |
| 474 | 56.07 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 12 | 6 |
| 475 | 56.07 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 13 |
| 476 | 56.07 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 12 | 6 |
| 479 | 56.08 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 17 | 19 |
| 480 | 56.08 | temperature | 25.0 | 30 | > th | dose dependent | sin | 20 | NA |
| 485 | 56.09 | radiation | 1.0 | 30 | > th | dose dependent | sin | 14 | NA |
| 487 | 56.10 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 11 | 4 |
| 488 | 56.10 | temperature | 10.0 | 30 | > th | dose independent | rect. | 12 | 6 |
| 491 | 56.10 | temperature | 10.0 | 30 | > th | dose independent | rect. | 18 | 18 |
| 493 | 56.10 | radiation | 40.0 | 720 | < th | dose dependent | rect. | 15 | 4 |
| 511 | 56.13 | radiation | 10.0 | 270 | > th | dose independent | rect. | 12 | 2 |
| 513 | 56.13 | wind | 9.0 | 30 | < th | dose independent | rect. | 18 | 18 |
| 532 | 56.19 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 10 | 10 |
| 544 | 56.22 | temperature | 15.0 | 270 | > th | dose independent | rect. | 20 | 11 |
| 572 | 56.26 | temperature | 30.0 | 90 | < th | dose independent | rect. | 7 | 13 |
| 610 | 56.35 | wind | 7.0 | 270 | < th | dose independent | rect. | 12 | 3 |
| 616 | 56.35 | temperature | 30.0 | 270 | > th | dose independent | rect. | 8 | 7 |
| 631 | 56.35 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 12 | 6 |
| 640 | 56.37 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 12 | 2 |
| 643 | 56.38 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 12 | 3 |
| 645 | 56.38 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 12 | 3 |
| 654 | 56.40 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 12 | 19 |
| 658 | 56.40 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 12 | 19 |
| 659 | 56.41 | temperature | 15.0 | 90 | > th | dose independent | rect. | 12 | 19 |
| 661 | 56.41 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 12 | 2 |
| 668 | 56.42 | humidity | 90.0 | 30 | < th | dose independent | rect. | 12 | 16 |
| 696 | 56.46 | radiation | 40.0 | 720 | < th | dose dependent | rect. | 15 | 12 |
| 698 | 56.47 | radiation | 30.0 | 720 | < th | dose independent | rect. | 15 | 4 |
| 714 | 56.51 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 18 | 18 |
| 717 | 56.51 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 8 | 4 |
| 720 | 56.53 | humidity | 50.0 | 30 | > th | dose independent | rect. | 18 | 18 |
| 721 | 56.53 | temperature | 10.0 | 30 | > th | dose dependent | sin | 20 | NA |
| 729 | 56.55 | temperature | 10.0 | 270 | > th | dose independent | rect. | 12 | 3 |
| 735 | 56.55 | temperature | 10.0 | 270 | > th | dose independent | rect. | 15 | 21 |
| 737 | 56.55 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 20 | 11 |
| 823 | 56.64 | temperature | 25.0 | 270 | > th | dose dependent | sin | 1 | NA |
| 835 | 56.66 | temperature | 30.0 | 270 | < th | dose independent | rect. | 23 | 13 |
| 846 | 56.68 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 12 | 16 |
| 850 | 56.69 | wind | 9.0 | 270 | < th | dose independent | rect. | 20 | 11 |
| 852 | 56.69 | temperature | 30.0 | 270 | < th | dose independent | rect. | 20 | 11 |
| 853 | 56.69 | humidity | 50.0 | 270 | > th | dose independent | rect. | 20 | 11 |
| 855 | 56.69 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 20 | 11 |
| 856 | 56.69 | radiation | 30.0 | 270 | < th | dose independent | rect. | 20 | 11 |
| 858 | 56.69 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 13 |
| 859 | 56.69 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 13 |
| 870 | 56.71 | wind | 9.0 | 270 | < th | dose independent | rect. | 15 | 21 |
| 871 | 56.71 | wind | 9.0 | 270 | < th | dose dependent | rect. | 12 | 2 |
| 880 | 56.73 | radiation | 30.0 | 270 | < th | dose independent | rect. | 15 | 11 |
| 892 | 56.74 | wind | 9.0 | 90 | < th | dose dependent | rect. | 12 | 5 |
| 896 | 56.76 | temperature | 15.0 | 270 | > th | dose independent | rect. | 2 | 13 |
| 916 | 56.79 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 8 | 1 |
| 929 | 56.81 | temperature | 30.0 | 10 | < th | dose independent | rect. | 10 | 2 |
| 932 | 56.81 | humidity | 90.0 | 30 | < th | dose independent | rect. | 12 | 14 |
| 941 | 56.82 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 12 | 12 |
| 944 | 56.83 | wind | 1.0 | 90 | > th | dose independent | rect. | 7 | 5 |
| 950 | 56.84 | wind | 1.0 | 270 | > th | dose independent | rect. | 7 | 13 |
| 958 | 56.85 | temperature | 30.0 | 270 | < th | dose independent | rect. | 15 | 21 |
| 962 | 56.86 | humidity | 70.0 | 270 | > th | dose independent | rect. | 8 | 1 |
| 963 | 56.86 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 15 | 11 |
| 964 | 56.86 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 7 | 5 |
| 969 | 56.87 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 12 | 2 |
| 976 | 56.88 | temperature | 10.0 | 90 | > th | dose independent | rect. | 7 | 5 |
| 977 | 56.88 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 7 | 5 |
| 978 | 56.88 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 7 | 5 |
| 979 | 56.88 | temperature | 25.0 | 90 | < th | dose independent | rect. | 10 | 11 |
| 989 | 56.89 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 7 | 5 |
| 990 | 56.89 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 7 | 5 |
| 992 | 56.90 | wind | 9.0 | 90 | < th | dose independent | rect. | 12 | 19 |
| 998 | 56.91 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 20 | 11 |