BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0497700 Os09g0497700|AK101485
(446 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0497700 Prefoldin domain containing protein 744 0.0
Os08g0519400 Apolipoprotein/apolipophorin domain containing... 498 e-141
Os04g0607150 Hypothetical protein 96 6e-20
>Os09g0497700 Prefoldin domain containing protein
Length = 446
Score = 744 bits (1920), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/399 (92%), Positives = 371/399 (92%)
Query: 48 GQLRAKISALESSITKQTQELKSKDDGIQXXXXXXXXXXXXXATLQSEITSLETKRSLAA 107
GQLRAKISALESSITKQTQELKSKDDGIQ ATLQSEITSLETKRSLAA
Sbjct: 48 GQLRAKISALESSITKQTQELKSKDDGIQKLEKLIEEKSKKIATLQSEITSLETKRSLAA 107
Query: 108 EEQAGKANARAXXXXXXXXXXXXXXXAQNSKKSTVEARAGDADKKVQELNAKLEKLQKTS 167
EEQAGKANARA AQNSKKSTVEARAGDADKKVQELNAKLEKLQKTS
Sbjct: 108 EEQAGKANARAIELEKQIEKLKKDIEAQNSKKSTVEARAGDADKKVQELNAKLEKLQKTS 167
Query: 168 DEQKRRIQKTEHALKVAEEELMRVQLETTTQLNQLKEVHGAWLPPWLVTHTARAKEMMLS 227
DEQKRRIQKTEHALKVAEEELMRVQLETTTQLNQLKEVHGAWLPPWLVTHTARAKEMMLS
Sbjct: 168 DEQKRRIQKTEHALKVAEEELMRVQLETTTQLNQLKEVHGAWLPPWLVTHTARAKEMMLS 227
Query: 228 HWNEHGKPAVNSLLQKASEKSVQAKKWAEPHVEAAKTKWIPVIKEKWVTMKTNAEPYVQK 287
HWNEHGKPAVNSLLQKASEKSVQAKKWAEPHVEAAKTKWIPVIKEKWVTMKTNAEPYVQK
Sbjct: 228 HWNEHGKPAVNSLLQKASEKSVQAKKWAEPHVEAAKTKWIPVIKEKWVTMKTNAEPYVQK 287
Query: 288 VSAKSIELYQASKDVVLPHVVKAHKIADPYFQEAKKVSKPYIDQVAKATKPHVEKIRIYL 347
VSAKSIELYQASKDVVLPHVVKAHKIADPYFQEAKKVSKPYIDQVAKATKPHVEKIRIYL
Sbjct: 288 VSAKSIELYQASKDVVLPHVVKAHKIADPYFQEAKKVSKPYIDQVAKATKPHVEKIRIYL 347
Query: 348 KPYTKRAVHIYGNFLEKATAYHQQAQATVLDYLHQHELTKEFATEELAWYLASALLIMPI 407
KPYTKRAVHIYGNFLEKATAYHQQAQATVLDYLHQHELTKEFATEELAWYLASALLIMPI
Sbjct: 348 KPYTKRAVHIYGNFLEKATAYHQQAQATVLDYLHQHELTKEFATEELAWYLASALLIMPI 407
Query: 408 YVFYNVLVETFCSKKKKKATRNVNANHGHRKHKRRHADK 446
YVFYNVLVETFCSKKKKKATRNVNANHGHRKHKRRHADK
Sbjct: 408 YVFYNVLVETFCSKKKKKATRNVNANHGHRKHKRRHADK 446
>Os08g0519400 Apolipoprotein/apolipophorin domain containing protein
Length = 452
Score = 498 bits (1283), Expect = e-141, Method: Compositional matrix adjust.
Identities = 242/376 (64%), Positives = 292/376 (77%), Gaps = 1/376 (0%)
Query: 49 QLRAKISALESSITKQTQELKSKDDGIQXXXXXXXXXXXXXATLQSEITSLETKRSLAAE 108
QLR KIS LES I+++++ELK+KDD I A+LQSEITSL+ K S+AAE
Sbjct: 59 QLRDKISGLESGISERSKELKAKDDSIAKLEKLIEEKSQKIASLQSEITSLQAKGSVAAE 118
Query: 109 EQAGKANARAXXXXXXXXXXXXXXXAQNSKKSTVEARAGDADKKVQELNAKLEKLQKTSD 168
EQAGKANARA AQ+ KK+T+E RA DA+K+VQELNAK++ LQKT+D
Sbjct: 119 EQAGKANARAVELEKQIDKLKKDVEAQSVKKATLENRANDAEKRVQELNAKIDALQKTND 178
Query: 169 EQKRRIQKTEHALKVAEEELMRVQLETTTQLNQLKEVHGAWLPPWLVTHTARAKEMMLSH 228
EQKR++Q TE ALKVAEEELMR+ LE TT+ QL EVHGAWLPPWL H+A E++ H
Sbjct: 179 EQKRKLQSTERALKVAEEELMRLHLEATTKSKQLTEVHGAWLPPWLAAHSAHYMEVISGH 238
Query: 229 WNEHGKPAVNSLLQKASEKSVQAKKWAEPHVEAAKTKWIPVIKEKWVTMKTNAEPYVQKV 288
WNEHGKPA+NS LQKASEKS QAKKWAEPHVE AK KW+PV KEK V +K N EPYVQKV
Sbjct: 239 WNEHGKPAINSFLQKASEKSAQAKKWAEPHVETAKMKWVPV-KEKLVVLKKNTEPYVQKV 297
Query: 289 SAKSIELYQASKDVVLPHVVKAHKIADPYFQEAKKVSKPYIDQVAKATKPHVEKIRIYLK 348
S+KS+E+Y+AS+D V PHV K + ADPYFQEAKK SKPYIDQVA+ TKPHVEK+R LK
Sbjct: 298 SSKSVEVYEASRDAVKPHVAKVKEFADPYFQEAKKFSKPYIDQVAEVTKPHVEKVRTTLK 357
Query: 349 PYTKRAVHIYGNFLEKATAYHQQAQATVLDYLHQHELTKEFATEELAWYLASALLIMPIY 408
PYTKRAV +YG+FLE AT YH+QAQ+T+LDYLHQHE++K AT+EL W+LASALL +P+Y
Sbjct: 358 PYTKRAVRVYGSFLESATTYHRQAQSTILDYLHQHEVSKSLATKELVWFLASALLAIPVY 417
Query: 409 VFYNVLVETFCSKKKK 424
+ Y +L+E FC K K+
Sbjct: 418 IIYRLLMEAFCKKPKR 433
>Os04g0607150 Hypothetical protein
Length = 203
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 85/148 (57%)
Query: 267 IPVIKEKWVTMKTNAEPYVQKVSAKSIELYQASKDVVLPHVVKAHKIADPYFQEAKKVSK 326
+P K ++K + + Y ++ +S + Y+ +D + P + KA + AD Y+QE+KK +
Sbjct: 23 VPAAKAHLNSLKKSTDVYASAIATRSTQAYRVCRDTIQPSMAKAQEFADHYWQESKKFTT 82
Query: 327 PYIDQVAKATKPHVEKIRIYLKPYTKRAVHIYGNFLEKATAYHQQAQATVLDYLHQHELT 386
PYI +V A++P + ++ L+PYT+ + + + A+ H+Q Q + +++ + L
Sbjct: 83 PYITKVVAASEPRLSRVCAVLEPYTRPVISAWRKLVMSASVPHRQVQKGIKHFVNDNGLL 142
Query: 387 KEFATEELAWYLASALLIMPIYVFYNVL 414
K + + AW+ ASAL+ +P++ Y +L
Sbjct: 143 KSDSADRFAWFTASALVALPMFYTYKML 170
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.124 0.347
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,797,606
Number of extensions: 369910
Number of successful extensions: 1506
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1485
Number of HSP's successfully gapped: 3
Length of query: 446
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 342
Effective length of database: 11,605,545
Effective search space: 3969096390
Effective search space used: 3969096390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 158 (65.5 bits)