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Os08g0519400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Apolipoprotein/apolipophorin domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12 (0.0183) R2 : 0.0424
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.173 (0.0385) R2dN8 : 0.0547 R2N8 : 0.0424
σ : 0.344
deviance : 54.31
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
34.22 0.275 12 0.0811 0.478 0.563 -0.586 0.461 0.247 8.05 23.8 785 -- --
34.48 0.273 11.9 0.128 0.482 0.495 -0.495 -- 0.264 7.98 23.91 795 -- --
35.13 0.276 12 0.0821 0.484 0.523 -- 0.29 0.256 7.82 23.85 787 -- --
35.13 0.276 11.9 0.138 0.486 0.512 -- -- 0.263 7.84 23.94 791 -- --
44.41 0.31 12 0.207 -- 0.802 -- -0.0968 0.296 -- 44.15 628 -- --
37.99 0.289 12 0.0114 0.528 -- -0.521 -- 0.167 8.27 -- -- -- --
38.81 0.292 12 -0.00491 0.531 -- -- -- 0.166 8.14 -- -- -- --
44.42 0.31 12 0.19 -- 0.8 -- -- 0.291 -- 48.54 628 -- --
35.6 0.278 11.9 -- 0.489 0.465 -- -- 0.258 7.84 24 792 -- --
54.31 0.344 12 -0.000483 -- -- -- -- 0.173 -- -- -- -- --
38.81 0.291 12 -- 0.531 -- -- -- 0.167 8.14 -- -- -- --
45.29 0.313 12 -- -- 0.73 -- -- 0.261 -- 69.95 619 -- --
54.31 0.344 12 -- -- -- -- -- 0.173 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 19.88 temperature 10.0 270 > th dose dependent rect. 3 7
25 23.57 temperature 20.0 270 > th dose independent rect. 4 6
26 23.58 humidity 60.0 270 > th dose independent rect. 3 8
38 24.34 wind 7.0 270 < th dose independent rect. 3 8
52 25.02 precipitation 0.1 270 < th dose independent rect. 3 8
53 25.02 precipitation 0.1 270 < th dose dependent rect. 3 8
58 25.14 atmosphere 995.0 270 > th dose independent rect. 3 8
59 25.14 atmosphere 1015.0 270 < th dose independent rect. 3 8
60 25.14 temperature 10.0 270 > th dose independent rect. 11 16
61 25.17 atmosphere 995.0 270 > th dose independent rect. 11 16
64 25.27 wind 5.0 270 < th dose independent rect. 4 6
67 25.28 radiation 1.0 270 < th dose dependent rect. 21 14
69 25.30 wind 9.0 270 < th dose independent rect. 11 16
72 25.41 temperature 20.0 10 > th dose dependent rect. 6 5
77 25.50 radiation 40.0 270 < th dose independent rect. 17 16
84 25.57 atmosphere 995.0 270 > th dose independent rect. 23 16
88 25.67 radiation 1.0 270 < th dose dependent sin 10 NA
89 25.68 temperature 10.0 270 > th dose independent rect. 15 8
90 25.68 temperature 10.0 270 > th dose independent rect. 23 16
96 25.76 radiation 40.0 270 < th dose independent rect. 15 8
97 25.79 atmosphere 1000.0 270 > th dose independent rect. 9 7
98 25.79 precipitation 0.1 270 < th dose independent rect. 15 8
99 25.79 precipitation 0.1 270 < th dose dependent rect. 15 8
107 25.90 radiation 1.0 270 < th dose dependent rect. 21 10
110 25.91 precipitation 0.1 270 < th dose independent rect. 11 16
111 25.91 precipitation 0.1 270 < th dose dependent rect. 11 16
112 25.92 wind 9.0 270 < th dose independent rect. 15 8
115 25.94 wind 9.0 270 < th dose independent rect. 23 16
116 25.94 wind 9.0 270 < th dose dependent rect. 3 8
117 25.96 precipitation 0.1 270 < th dose independent rect. 23 16
120 25.96 precipitation 0.1 270 < th dose dependent rect. 23 16
129 26.05 temperature 10.0 270 > th dose independent rect. 21 8
130 26.05 temperature 30.0 270 < th dose independent rect. 21 8
131 26.05 humidity 50.0 270 > th dose independent rect. 21 8
134 26.05 atmosphere 995.0 270 > th dose independent rect. 21 8
135 26.05 radiation 20.0 270 < th dose independent rect. 21 8
138 26.05 temperature 10.0 270 > th dose independent rect. 5 16
139 26.05 atmosphere 1000.0 30 > th dose independent rect. 11 19
142 26.06 wind 9.0 270 < th dose independent rect. 21 8
143 26.06 radiation 20.0 270 < th dose dependent rect. 21 8
146 26.08 radiation 1.0 270 < th dose independent rect. 21 8
152 26.10 precipitation 0.1 270 < th dose independent rect. 5 16
153 26.10 precipitation 0.1 270 < th dose dependent rect. 5 16
154 26.11 atmosphere 1015.0 270 < th dose independent rect. 23 16
160 26.15 atmosphere 1015.0 270 < th dose independent rect. 5 16
162 26.20 precipitation 0.1 270 < th dose independent rect. 16 17
165 26.20 precipitation 0.1 270 < th dose dependent rect. 16 17
174 26.27 wind 9.0 270 < th dose independent rect. 5 16
201 26.32 radiation 40.0 270 < th dose independent rect. 4 5
212 26.37 temperature 10.0 270 > th dose independent rect. 9 7
213 26.37 atmosphere 1015.0 270 < th dose independent rect. 9 7
214 26.37 temperature 10.0 270 > th dose independent rect. 16 17
219 26.40 humidity 50.0 10 > th dose independent rect. 6 18
225 26.43 precipitation 0.1 270 < th dose independent rect. 9 7
227 26.43 precipitation 0.1 270 < th dose independent rect. 21 8
228 26.43 precipitation 0.1 270 < th dose dependent rect. 9 7
229 26.43 precipitation 0.1 270 < th dose dependent rect. 21 8
231 26.44 temperature 25.0 10 > th dose dependent sin 8 NA
248 26.53 wind 9.0 270 < th dose independent rect. 16 17
249 26.55 humidity 60.0 90 > th dose independent rect. 6 5
276 26.68 wind 9.0 270 < th dose dependent rect. 5 4
290 26.69 radiation 1.0 270 < th dose independent rect. 21 14
303 26.73 temperature 25.0 10 > th dose independent rect. 6 5
304 26.73 wind 9.0 270 < th dose independent rect. 9 7
308 26.76 humidity 50.0 270 > th dose independent rect. 17 16
310 26.77 radiation 1.0 270 > th dose independent sin 10 NA
312 26.77 humidity 50.0 10 > th dose independent rect. 6 16
326 26.83 temperature 10.0 10 > th dose dependent rect. 6 18
337 26.86 temperature 10.0 270 > th dose dependent rect. 4 18
338 26.87 wind 1.0 270 > th dose independent rect. 15 8
349 26.90 wind 1.0 270 > th dose independent rect. 9 7
366 26.91 radiation 1.0 270 > th dose independent rect. 17 16
372 26.92 humidity 60.0 90 > th dose independent rect. 17 18
377 26.93 wind 1.0 270 > th dose independent rect. 11 16
381 26.95 radiation 1.0 90 > th dose independent rect. 4 7
424 27.02 temperature 10.0 10 > th dose dependent rect. 6 16
438 27.10 atmosphere 995.0 270 > th dose dependent rect. 10 18
439 27.11 radiation 1.0 270 < th dose independent sin 11 NA
446 27.13 radiation 1.0 270 > th dose independent rect. 9 7
450 27.14 radiation 1.0 90 > th dose independent rect. 11 7
455 27.15 temperature 30.0 270 < th dose independent rect. 4 5
457 27.15 atmosphere 1015.0 270 < th dose independent rect. 15 8
469 27.25 atmosphere 1015.0 270 < th dose dependent rect. 16 6
472 27.27 wind 1.0 270 > th dose independent rect. 22 6
477 27.27 humidity 50.0 270 > th dose dependent rect. 4 6
539 27.42 humidity 50.0 270 > th dose dependent rect. 5 4
543 27.44 atmosphere 995.0 270 > th dose independent rect. 17 16
557 27.49 humidity 50.0 270 > th dose dependent rect. 21 7
561 27.51 humidity 80.0 270 > th dose independent rect. 6 1
574 27.52 atmosphere 995.0 270 > th dose dependent rect. 10 6
576 27.53 humidity 50.0 270 > th dose independent rect. 4 17
587 27.55 atmosphere 1015.0 270 < th dose independent rect. 22 6
597 27.59 radiation 40.0 270 < th dose dependent rect. 15 7
603 27.62 atmosphere 1000.0 10 > th dose independent rect. 11 8
620 27.66 radiation 1.0 270 > th dose independent rect. 5 4
656 27.68 radiation 1.0 90 > th dose independent sin 7 NA
671 27.71 atmosphere 1000.0 10 > th dose independent rect. 24 6
679 27.73 radiation 1.0 90 < th dose independent sin 7 NA
682 27.75 wind 1.0 270 > th dose independent rect. 3 7
685 27.75 radiation 1.0 90 < th dose dependent sin 7 NA
687 27.75 atmosphere 995.0 270 > th dose dependent rect. 22 6
764 27.86 radiation 10.0 10 < th dose dependent rect. 16 8
775 27.89 wind 1.0 90 > th dose independent rect. 5 6
779 27.90 temperature 10.0 90 > th dose dependent rect. 18 17
780 27.91 temperature 10.0 1440 > th dose independent rect. 7 5
783 27.91 atmosphere 995.0 1440 > th dose independent rect. 7 5
790 27.91 temperature 10.0 1440 > th dose independent rect. 12 19
796 27.91 atmosphere 995.0 10 > th dose dependent rect. 24 6
814 27.93 wind 1.0 270 > th dose independent rect. 4 17
841 27.94 temperature 30.0 10 < th dose dependent rect. 24 17
871 27.98 wind 1.0 10 > th dose independent rect. 6 5
909 28.03 temperature 10.0 270 > th dose dependent rect. 16 18
924 28.07 radiation 20.0 10 < th dose dependent rect. 24 6
968 28.12 precipitation 0.1 10 < th dose independent rect. 6 18
969 28.12 wind 9.0 10 < th dose independent rect. 11 19
974 28.12 precipitation 0.1 10 < th dose dependent rect. 6 18
993 28.15 wind 3.0 270 < th dose independent rect. 6 1