BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0519400 Os08g0519400|AK070323
(452 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0519400 Apolipoprotein/apolipophorin domain containing... 683 0.0
Os09g0497700 Prefoldin domain containing protein 496 e-140
Os04g0607150 Hypothetical protein 112 7e-25
>Os08g0519400 Apolipoprotein/apolipophorin domain containing protein
Length = 452
Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/371 (92%), Positives = 342/371 (92%)
Query: 58 QQLRDKISGLESGISERSKELKAKDDSIAKLEKLIEEKSQKIASLQSEITSLQAKGSVAA 117
QQLRDKISGLESGISERSKELKAKDDSIAKLEKLIEEKSQKIASLQSEITSLQAKGSVAA
Sbjct: 58 QQLRDKISGLESGISERSKELKAKDDSIAKLEKLIEEKSQKIASLQSEITSLQAKGSVAA 117
Query: 118 EEQAGKANARAVELEKQIDKLKKDVEAQSVKKATLENRANDAEKRVQELNAKIDALQKTN 177
EEQAGKANARAVELEKQIDKLKKDVEAQSVKKATLENRANDAEKRVQELNAKIDALQKTN
Sbjct: 118 EEQAGKANARAVELEKQIDKLKKDVEAQSVKKATLENRANDAEKRVQELNAKIDALQKTN 177
Query: 178 DEQKRKLQSTERALKVAEEELMRLHLEATTKSKQLTEVHGAWLPPWLAAHSAHYMEVISG 237
DEQKRKLQSTERALKVAEEELMRLHLEATTKSKQLTEVHGAWLPPWLAAHSAHYMEVISG
Sbjct: 178 DEQKRKLQSTERALKVAEEELMRLHLEATTKSKQLTEVHGAWLPPWLAAHSAHYMEVISG 237
Query: 238 HWNEHGKPAINSFLXXXXXXXXXXXXXXXPHVETAKMXXXXXXXXXXXXXXNTEPYVQKV 297
HWNEHGKPAINSFL PHVETAKM NTEPYVQKV
Sbjct: 238 HWNEHGKPAINSFLQKASEKSAQAKKWAEPHVETAKMKWVPVKEKLVVLKKNTEPYVQKV 297
Query: 298 SSKSVEVYEASRDAVKPHVAKVKEFADPYFQEAKKFSKPYIDQVAEVTKPHVEKVRTTLK 357
SSKSVEVYEASRDAVKPHVAKVKEFADPYFQEAKKFSKPYIDQVAEVTKPHVEKVRTTLK
Sbjct: 298 SSKSVEVYEASRDAVKPHVAKVKEFADPYFQEAKKFSKPYIDQVAEVTKPHVEKVRTTLK 357
Query: 358 PYTKRAVRVYGSFLESATTYHRQAQSTILDYLHQHEVSKSLATKELVWFLASALLAIPVY 417
PYTKRAVRVYGSFLESATTYHRQAQSTILDYLHQHEVSKSLATKELVWFLASALLAIPVY
Sbjct: 358 PYTKRAVRVYGSFLESATTYHRQAQSTILDYLHQHEVSKSLATKELVWFLASALLAIPVY 417
Query: 418 IIYRLLMEAFC 428
IIYRLLMEAFC
Sbjct: 418 IIYRLLMEAFC 428
>Os09g0497700 Prefoldin domain containing protein
Length = 446
Score = 496 bits (1278), Expect = e-140, Method: Compositional matrix adjust.
Identities = 241/371 (64%), Positives = 292/371 (78%), Gaps = 1/371 (0%)
Query: 59 QLRDKISGLESGISERSKELKAKDDSIAKLEKLIEEKSQKIASLQSEITSLQAKGSVAAE 118
QLR KIS LES I+++++ELK+KDD I KLEKLIEEKS+KIA+LQSEITSL+ K S+AAE
Sbjct: 49 QLRAKISALESSITKQTQELKSKDDGIQKLEKLIEEKSKKIATLQSEITSLETKRSLAAE 108
Query: 119 EQAGKANARAVELEKQIDKLKKDVEAQSVKKATLENRANDAEKRVQELNAKIDALQKTND 178
EQAGKANARA+ELEKQI+KLKKD+EAQ+ KK+T+E RA DA+K+VQELNAK++ LQKT+D
Sbjct: 109 EQAGKANARAIELEKQIEKLKKDIEAQNSKKSTVEARAGDADKKVQELNAKLEKLQKTSD 168
Query: 179 EQKRKLQSTERALKVAEEELMRLHLEATTKSKQLTEVHGAWLPPWLAAHSAHYMEVISGH 238
EQKR++Q TE ALKVAEEELMR+ LE TT+ QL EVHGAWLPPWL H+A E++ H
Sbjct: 169 EQKRRIQKTEHALKVAEEELMRVQLETTTQLNQLKEVHGAWLPPWLVTHTARAKEMMLSH 228
Query: 239 WNEHGKPAINSFLXXXXXXXXXXXXXXXPHVETAKMX-XXXXXXXXXXXXXNTEPYVQKV 297
WNEHGKPA+NS L PHVE AK N EPYVQKV
Sbjct: 229 WNEHGKPAVNSLLQKASEKSVQAKKWAEPHVEAAKTKWIPVIKEKWVTMKTNAEPYVQKV 288
Query: 298 SSKSVEVYEASRDAVKPHVAKVKEFADPYFQEAKKFSKPYIDQVAEVTKPHVEKVRTTLK 357
S+KS+E+Y+AS+D V PHV K + ADPYFQEAKK SKPYIDQVA+ TKPHVEK+R LK
Sbjct: 289 SAKSIELYQASKDVVLPHVVKAHKIADPYFQEAKKVSKPYIDQVAKATKPHVEKIRIYLK 348
Query: 358 PYTKRAVRVYGSFLESATTYHRQAQSTILDYLHQHEVSKSLATKELVWFLASALLAIPVY 417
PYTKRAV +YG+FLE AT YH+QAQ+T+LDYLHQHE++K AT+EL W+LASALL +P+Y
Sbjct: 349 PYTKRAVHIYGNFLEKATAYHQQAQATVLDYLHQHELTKEFATEELAWYLASALLIMPIY 408
Query: 418 IIYRLLMEAFC 428
+ Y +L+E FC
Sbjct: 409 VFYNVLVETFC 419
>Os04g0607150 Hypothetical protein
Length = 203
Score = 112 bits (279), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 86/138 (62%)
Query: 289 NTEPYVQKVSSKSVEVYEASRDAVKPHVAKVKEFADPYFQEAKKFSKPYIDQVAEVTKPH 348
+T+ Y ++++S + Y RD ++P +AK +EFAD Y+QE+KKF+ PYI +V ++P
Sbjct: 36 STDVYASAIATRSTQAYRVCRDTIQPSMAKAQEFADHYWQESKKFTTPYITKVVAASEPR 95
Query: 349 VEKVRTTLKPYTKRAVRVYGSFLESATTYHRQAQSTILDYLHQHEVSKSLATKELVWFLA 408
+ +V L+PYT+ + + + SA+ HRQ Q I +++ + + KS + WF A
Sbjct: 96 LSRVCAVLEPYTRPVISAWRKLVMSASVPHRQVQKGIKHFVNDNGLLKSDSADRFAWFTA 155
Query: 409 SALLAIPVYIIYRLLMEA 426
SAL+A+P++ Y++L A
Sbjct: 156 SALVALPMFYTYKMLSAA 173
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.311 0.125 0.338
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,211,618
Number of extensions: 299621
Number of successful extensions: 2403
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 2383
Number of HSP's successfully gapped: 3
Length of query: 452
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 348
Effective length of database: 11,605,545
Effective search space: 4038729660
Effective search space used: 4038729660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 158 (65.5 bits)