Os09g0497700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Prefoldin domain containing protein.
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Os09g0497700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Prefoldin domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 91.9 | 0.45 | 8.21 | -1.06 | 1.72 | -1.87 | 0.106 | 0.0177 | 0.00397 | 19 | 24.51 | 4506 | -- | -- |
| 91.86 | 0.446 | 8.21 | -1.07 | 1.72 | -1.89 | 0.103 | -- | -0.000154 | 19 | 24.25 | 4521 | -- | -- |
| 91.87 | 0.446 | 8.2 | -1.05 | 1.71 | -1.91 | -- | -0.108 | 0.00389 | 19 | 24.15 | 4520 | -- | -- |
| 91.88 | 0.446 | 8.21 | -1.07 | 1.72 | -1.89 | -- | -- | 0.00166 | 19 | 24.22 | 4518 | -- | -- |
| 161.12 | 0.591 | 8.2 | -0.867 | -- | -3 | -- | 0.566 | -0.0449 | -- | 49.05 | 492 | -- | -- |
| 146.88 | 0.568 | 8.1 | -0.0844 | 1.69 | -- | 0.229 | -- | 0.484 | 19.1 | -- | -- | -- | -- |
| 147.02 | 0.568 | 8.1 | -0.0887 | 1.69 | -- | -- | -- | 0.484 | 19.1 | -- | -- | -- | -- |
| 161.87 | 0.593 | 8.16 | -0.779 | -- | -2.98 | -- | -- | 0.0269 | -- | 54.04 | 493 | -- | -- |
| 106.17 | 0.48 | 8.15 | -- | 1.62 | -1.43 | -- | -- | 0.239 | 19 | 30.39 | 1739 | -- | -- |
| 297.37 | 0.806 | 8.06 | -0.121 | -- | -- | -- | -- | 0.454 | -- | -- | -- | -- | -- |
| 147.23 | 0.568 | 8.09 | -- | 1.69 | -- | -- | -- | 0.494 | 19.1 | -- | -- | -- | -- |
| 176.61 | 0.619 | 8.13 | -- | -- | -2.71 | -- | -- | 0.146 | -- | 68.86 | 482 | -- | -- |
| 297.76 | 0.805 | 8.06 | -- | -- | -- | -- | -- | 0.468 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 81.80 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 21 |
| 10 | 85.97 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 22 |
| 21 | 88.19 | temperature | 30 | 270 | < th | dose dependent | rect. | 10 | 22 |
| 31 | 90.13 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 16 |
| 33 | 90.33 | temperature | 30 | 4320 | < th | dose dependent | rect. | 22 | 1 |
| 35 | 90.38 | temperature | 10 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 38 | 90.58 | wind | 7 | 43200 | < th | dose independent | rect. | 20 | 18 |
| 39 | 90.58 | wind | 5 | 43200 | > th | dose dependent | rect. | 19 | 20 |
| 40 | 90.61 | radiation | 30 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 42 | 90.66 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 18 |
| 49 | 90.77 | wind | 3 | 43200 | > th | dose dependent | rect. | 9 | 3 |
| 51 | 90.81 | wind | 5 | 43200 | > th | dose independent | rect. | 19 | 21 |
| 54 | 90.85 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 2 |
| 64 | 90.99 | wind | 9 | 43200 | < th | dose dependent | rect. | 8 | 4 |
| 75 | 91.08 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 4 |
| 82 | 91.10 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 3 |
| 84 | 91.10 | wind | 5 | 43200 | > th | dose dependent | rect. | 3 | 12 |
| 90 | 91.13 | wind | 3 | 43200 | > th | dose dependent | rect. | 8 | 5 |
| 95 | 91.15 | wind | 3 | 43200 | > th | dose dependent | rect. | 7 | 7 |
| 101 | 91.18 | wind | 3 | 43200 | > th | dose dependent | rect. | 5 | 9 |
| 102 | 91.19 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 3 |
| 104 | 91.19 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 22 |
| 112 | 91.24 | wind | 7 | 43200 | < th | dose independent | rect. | 23 | 15 |
| 114 | 91.25 | wind | 5 | 43200 | > th | dose independent | rect. | 3 | 12 |
| 115 | 91.25 | wind | 7 | 43200 | < th | dose independent | rect. | 2 | 12 |
| 125 | 91.29 | wind | 5 | 43200 | > th | dose independent | sin | 3 | NA |
| 141 | 91.33 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 154 | 91.38 | wind | 5 | 43200 | < th | dose independent | sin | 4 | NA |
| 176 | 91.42 | wind | 7 | 43200 | > th | dose independent | rect. | 23 | 15 |
| 199 | 91.48 | wind | 5 | 43200 | > th | dose dependent | sin | 4 | NA |
| 215 | 91.53 | radiation | 30 | 14400 | < th | dose independent | rect. | 22 | 10 |
| 216 | 91.53 | radiation | 30 | 14400 | < th | dose independent | rect. | 20 | 12 |
| 222 | 91.54 | temperature | 15 | 1440 | > th | dose dependent | rect. | 7 | 2 |
| 302 | 91.72 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 8 |
| 348 | 91.82 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 383 | 91.89 | wind | 5 | 43200 | > th | dose dependent | rect. | 2 | 22 |
| 403 | 91.93 | temperature | 25 | 4320 | < th | dose dependent | sin | 14 | NA |
| 430 | 91.98 | wind | 5 | 43200 | > th | dose dependent | rect. | 7 | 23 |
| 441 | 92.00 | humidity | 60 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 444 | 92.00 | wind | 5 | 43200 | > th | dose dependent | no | NA | NA |
| 451 | 92.01 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 465 | 92.03 | temperature | 25 | 4320 | < th | dose dependent | rect. | 15 | 19 |
| 561 | 92.17 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 23 |
| 599 | 92.24 | wind | 5 | 43200 | > th | dose independent | rect. | 1 | 23 |
| 613 | 92.26 | wind | 5 | 43200 | > th | dose independent | no | NA | NA |
| 614 | 92.26 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 4 |
| 633 | 92.29 | wind | 9 | 43200 | < th | dose independent | rect. | 9 | 21 |
| 671 | 92.33 | radiation | 1 | 14400 | < th | dose independent | rect. | 20 | 13 |
| 674 | 92.33 | wind | 5 | 43200 | > th | dose independent | rect. | 7 | 23 |
| 686 | 92.35 | radiation | 1 | 14400 | < th | dose independent | rect. | 24 | 9 |
| 687 | 92.35 | radiation | 1 | 14400 | < th | dose independent | rect. | 22 | 11 |
| 723 | 92.39 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 4 |
| 815 | 92.47 | humidity | 60 | 43200 | > th | dose independent | rect. | 7 | 2 |
| 827 | 92.47 | temperature | 25 | 4320 | < th | dose dependent | rect. | 5 | 23 |
| 865 | 92.50 | temperature | 25 | 4320 | < th | dose dependent | rect. | 7 | 23 |
| 866 | 92.50 | temperature | 25 | 4320 | < th | dose dependent | rect. | 20 | 23 |
| 876 | 92.51 | temperature | 25 | 4320 | < th | dose dependent | no | NA | NA |
| 996 | 92.58 | temperature | 20 | 43200 | > th | dose independent | rect. | 19 | 2 |