BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0494300 Os09g0494300|AK101317
(315 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0494300 Similar to Methyl-CpG-binding domain protein 1... 626 e-180
Os06g0702100 Zinc finger, CW-type domain containing protein 275 4e-74
Os05g0404600 Zinc finger, CW-type domain containing protein 131 8e-31
Os05g0404700 Zinc finger, CW-type domain containing protein 117 9e-27
>Os09g0494300 Similar to Methyl-CpG-binding domain protein 1 (Methyl-CpG binding
protein MBD1)
Length = 315
Score = 626 bits (1615), Expect = e-180, Method: Compositional matrix adjust.
Identities = 303/315 (96%), Positives = 303/315 (96%)
Query: 1 MGNSKTPQPSKKSRIMLSDTDGHQLDNDEFSSESASNQMVLFNPETVAKGQDELGENHSP 60
MGNSKTPQPSKKSRIMLSDTDGHQLDNDEFSSESASNQMVLFNPETVAKGQDELGENHSP
Sbjct: 1 MGNSKTPQPSKKSRIMLSDTDGHQLDNDEFSSESASNQMVLFNPETVAKGQDELGENHSP 60
Query: 61 SLQKSANNPNRGMPSIGAFTVQCAKCFKWRLIPTKEKYEEIRECIIQEPFECERAREWRP 120
SLQKSANNPNRGMPSIGAFTVQCAKCFKWRLIPTKEKYEEIRECIIQEPFECERAREWRP
Sbjct: 61 SLQKSANNPNRGMPSIGAFTVQCAKCFKWRLIPTKEKYEEIRECIIQEPFECERAREWRP 120
Query: 121 DVTCNDPEDISQDGSRLWAIDKPNIALPPPGWERQIRIRGEGGTKFADVYYTSPTGRKLR 180
DVTCNDPEDISQDGSRLWAIDKPNIALPPPGWERQIRIRGEGGTKFADVYYTSPTGRKLR
Sbjct: 121 DVTCNDPEDISQDGSRLWAIDKPNIALPPPGWERQIRIRGEGGTKFADVYYTSPTGRKLR 180
Query: 181 SLVEIDRYLLENPDYVAQGVTLTQFSFQIPRPLRQDYVKKRPKIVNPNDEASVVTTKSVK 240
SLVEIDRYLLENPDYVAQGVTLTQFSFQIPRPLRQDYVKKRPKIVNPNDEASVVTTKSVK
Sbjct: 181 SLVEIDRYLLENPDYVAQGVTLTQFSFQIPRPLRQDYVKKRPKIVNPNDEASVVTTKSVK 240
Query: 241 PEEVSPIAWAAPSVHQEGEAGERASHXXXXXXXXXXXXTRKRKAESPLFEEAHSNHVSDE 300
PEEVSPIAWAAPSVHQEGEAGERASH TRKRKAESPLFEEAHSNHVSDE
Sbjct: 241 PEEVSPIAWAAPSVHQEGEAGERASHADEPPEAEELELTRKRKAESPLFEEAHSNHVSDE 300
Query: 301 PKTKLEDTQNGGPSA 315
PKTKLEDTQNGGPSA
Sbjct: 301 PKTKLEDTQNGGPSA 315
>Os06g0702100 Zinc finger, CW-type domain containing protein
Length = 373
Score = 275 bits (703), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 144/283 (50%), Positives = 185/283 (65%), Gaps = 26/283 (9%)
Query: 3 NSKTPQPSKKS----------RIMLSDTDGHQLDNDEFSSESASNQMVLFNPETV--AKG 50
+S+ QPSKK I+ D+DG + ++S E S +V++NPE +G
Sbjct: 29 HSRKSQPSKKKPREFYDTVEVHIIDDDSDGDANIHKDYSMEDTSKHLVMYNPEITYDKQG 88
Query: 51 QDELGE--NHSPSLQKSANNPNRG----MPSIGAFTVQCAKCFKWRLIPTKEKYEEIREC 104
+ E+ E ++ SL + P G +PSIGA+TVQCA CFKWR+IPTKEKYEEIRE
Sbjct: 89 EVEVTEPIDNYTSLNQRYMKPRHGYNTVLPSIGAYTVQCAHCFKWRIIPTKEKYEEIREN 148
Query: 105 IIQEPFECERAREWRPDVTCNDPEDISQDGSRLWAIDKPNIALPPPGWERQIRIRGEGGT 164
I Q+ F CERAREW ++C DPEDISQDGSR+WAIDK +I+ PPGW+R++RIRGEG +
Sbjct: 149 ICQDVFVCERAREWNRVISCVDPEDISQDGSRVWAIDKASISQTPPGWDREVRIRGEGCS 208
Query: 165 KFADVYYTSPTGRKLRSLVEIDRYLLENPDYVAQGVTLTQFSFQIPRPLRQDYVKKRPKI 224
KFADVYYTSPTG+KLRSLVE+ RYL ENP Y+ QGV LTQFSF P+PL++DYV+K
Sbjct: 209 KFADVYYTSPTGKKLRSLVEVGRYLAENPHYIRQGVNLTQFSFATPKPLQEDYVRKHTYA 268
Query: 225 VNPNDEASVVTTKSVKPEEVSPIAWAAPSVHQE--GEAGERAS 265
P + ++ +V P+ WAAP E GE G S
Sbjct: 269 ATPE------LPELLETAQVDPLCWAAPPTRSELLGELGASTS 305
>Os05g0404600 Zinc finger, CW-type domain containing protein
Length = 168
Score = 131 bits (329), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 84/137 (61%), Gaps = 7/137 (5%)
Query: 75 SIGAFTVQCAKCFKWRLIPTKEKYEEIRECIIQEPFECERAREWRPDVTCNDPEDISQDG 134
SIG + VQC +C KWR +PTK+++E IRE +EP+ C R RPD +C DP DI D
Sbjct: 9 SIGMYAVQCCECHKWRKVPTKDEFETIRENFTEEPWHCSR----RPDCSCEDPADIEYDS 64
Query: 135 SRLWAIDKPNIALPPPGWERQIRIRGEGGTKFADVYYTSPTGRKLRSLVEIDRYLLENPD 194
SR+W +DKPNI PP G ER + +RG+ D YY P G+++R E+D++L NP
Sbjct: 65 SRIWVLDKPNIPKPPAGTERLVIMRGDLSK--MDTYYVMPNGKRVRCTAEVDKFLEANPQ 122
Query: 195 YVAQGVTLTQFSFQIPR 211
Y ++ FSF P+
Sbjct: 123 Y-KDRFSVESFSFTTPK 138
>Os05g0404700 Zinc finger, CW-type domain containing protein
Length = 175
Score = 117 bits (294), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 85/140 (60%), Gaps = 7/140 (5%)
Query: 76 IGAFTVQCAKCFKWRLIPTKEKYEEIRECIIQEPFECERAREWRPDVTCNDPEDISQDGS 135
I + + C KC KWR IPTKE++E IRE +P+ C + R D +C PEDI D S
Sbjct: 10 ITMYAITCCKCEKWRTIPTKEEFEVIRENYPAKPWFCSKKR----DCSCEHPEDIQYDTS 65
Query: 136 RLWAIDKPNIALPPPGWERQIRIRGEGGTKFADVYYTSPTGRKLRSLVEIDRYLLENPDY 195
R+WAID+PNI PPP ER + +R + D YY P G++ + +IDR+L ENP+Y
Sbjct: 66 RIWAIDRPNIPKPPPKTERLLIMRNDLSK--MDAYYVLPNGKRAKGKPDIDRFLKENPEY 123
Query: 196 VAQGVTLTQFSFQIPRPLRQ 215
A + L+ F+F P+ +++
Sbjct: 124 AA-TLPLSSFNFSTPKIVKE 142
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.311 0.130 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,214,935
Number of extensions: 534744
Number of successful extensions: 809
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 803
Number of HSP's successfully gapped: 4
Length of query: 315
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 214
Effective length of database: 11,762,187
Effective search space: 2517108018
Effective search space used: 2517108018
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 156 (64.7 bits)