Os09g0494300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Methyl-CpG-binding domain protein 1 (Methyl-CpG binding protein MBD1).
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Os09g0494300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Methyl-CpG-binding domain protein 1 (Methyl-CpG binding protein MBD1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 12.49 | 0.166 | 10.5 | 0.535 | 0.316 | -0.253 | 0.176 | -0.248 | 0.146 | 7.72 | 29.9 | 250 | -- | -- |
| 12.5 | 0.165 | 10.5 | 0.516 | 0.315 | -0.278 | 0.175 | -- | 0.144 | 7.7 | 29.9 | 249 | -- | -- |
| 12.57 | 0.165 | 10.5 | 0.529 | 0.315 | -0.26 | -- | -0.124 | 0.144 | 7.66 | 29.83 | 249 | -- | -- |
| 12.57 | 0.165 | 10.5 | 0.517 | 0.316 | -0.274 | -- | -- | 0.143 | 7.65 | 29.85 | 249 | -- | -- |
| 16.46 | 0.189 | 10.5 | 0.488 | -- | -0.175 | -- | -0.0458 | 0.162 | -- | 29.9 | 1561 | -- | -- |
| 14.34 | 0.178 | 10.5 | 0.555 | 0.244 | -- | 0.104 | -- | 0.133 | 8.71 | -- | -- | -- | -- |
| 14.37 | 0.178 | 10.5 | 0.558 | 0.245 | -- | -- | -- | 0.133 | 8.61 | -- | -- | -- | -- |
| 16.45 | 0.189 | 10.5 | 0.501 | -- | -0.185 | -- | -- | 0.158 | -- | 29.91 | 1576 | -- | -- |
| 19.38 | 0.205 | 10.5 | -- | 0.369 | -0.363 | -- | -- | 0.0767 | 7.37 | 29.7 | 362 | -- | -- |
| 17.74 | 0.197 | 10.5 | 0.559 | -- | -- | -- | -- | 0.135 | -- | -- | -- | -- | -- |
| 22.59 | 0.222 | 10.5 | -- | 0.247 | -- | -- | -- | 0.0709 | 8.45 | -- | -- | -- | -- |
| 22.77 | 0.222 | 10.5 | -- | -- | -0.265 | -- | -- | 0.0839 | -- | 29.6 | 5898 | -- | -- |
| 25.99 | 0.238 | 10.5 | -- | -- | -- | -- | -- | 0.0732 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 11.25 | wind | 9.0 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 4 | 11.27 | wind | 9.0 | 14400 | < th | dose independent | rect. | 18 | 15 |
| 8 | 11.28 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 18 | 12 |
| 17 | 11.33 | wind | 9.0 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 19 | 11.33 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 10 | 1 |
| 20 | 11.33 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 8 | 9 |
| 21 | 11.33 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 8 | 14 |
| 35 | 11.34 | atmosphere | 1005.0 | 14400 | < th | dose dependent | sin | 21 | NA |
| 89 | 11.35 | atmosphere | 1005.0 | 14400 | < th | dose dependent | sin | 19 | NA |
| 93 | 11.35 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 94 | 11.35 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 22 | 1 |
| 96 | 11.35 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 20 | 3 |
| 130 | 11.35 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 20 | 20 |
| 136 | 11.35 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 16 | 21 |
| 162 | 11.36 | atmosphere | 1005.0 | 14400 | < th | dose dependent | no | NA | NA |
| 189 | 11.36 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 20 | 16 |
| 208 | 11.36 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 16 | 19 |
| 262 | 11.37 | atmosphere | 1005.0 | 14400 | < th | dose dependent | sin | 16 | NA |
| 292 | 11.37 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 22 | 14 |
| 328 | 11.38 | atmosphere | 1005.0 | 14400 | < th | dose dependent | sin | 7 | NA |
| 329 | 11.38 | atmosphere | 1005.0 | 14400 | < th | dose dependent | sin | 14 | NA |
| 533 | 11.42 | wind | 9.0 | 14400 | < th | dose independent | rect. | 18 | 7 |
| 535 | 11.42 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 571 | 11.43 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 608 | 11.44 | wind | 9.0 | 14400 | > th | dose independent | rect. | 18 | 6 |
| 664 | 11.45 | atmosphere | 1000.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 865 | 11.48 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 2 |
| 884 | 11.48 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 18 | 6 |
| 957 | 11.49 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 993 | 11.50 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 995 | 11.50 | wind | 9.0 | 14400 | < th | dose independent | rect. | 18 | 3 |