BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0494300 Os09g0494300|AK101317
(315 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G35330.1 | chr5:13523725-13525270 REVERSE LENGTH=273 254 6e-68
AT5G35338.2 | chr5:13549343-13550124 REVERSE LENGTH=156 133 1e-31
AT4G22745.1 | chr4:11947421-11948514 REVERSE LENGTH=205 111 4e-25
AT3G63030.1 | chr3:23295394-23296425 FORWARD LENGTH=187 107 6e-24
AT4G00416.1 | chr4:179022-179513 FORWARD LENGTH=164 61 9e-10
>AT5G35330.1 | chr5:13523725-13525270 REVERSE LENGTH=273
Length = 272
Score = 254 bits (648), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 118/226 (52%), Positives = 165/226 (73%), Gaps = 11/226 (4%)
Query: 37 NQMVLFNPETVAKGQDELGENHSPSLQKSANNPNRGMPSIGAFTVQCAKCFKWRLIPTKE 96
NQ+V+++ KG D+ E P +Q + PSIGAFTVQCA CFKWRL+P+ +
Sbjct: 22 NQLVVYD----LKGNDDTEEEVLP-VQSQPLSSRTQCPSIGAFTVQCASCFKWRLMPSMQ 76
Query: 97 KYEEIRECIIQEPFECERAREWRPDVTCNDPEDISQDGSRLWAIDKPNIALPPPGWERQI 156
KYEEIRE +++ PF C+ AREW+PD++C+ P DI QDG+RLWAIDKPNI+ PP GW+R +
Sbjct: 77 KYEEIREQLLENPFFCDTAREWKPDISCDVPADIYQDGTRLWAIDKPNISRPPAGWQRLL 136
Query: 157 RIRGEGGTKFADVYYTSPTGRKLRSLVEIDRYLLENPDYVAQGVTLTQFSFQIPRPLRQD 216
RIRGEGGT+FADVYY +P+G+KLRS VE+ +YL +N +Y+ +GV L+QFSFQIP+PL+ D
Sbjct: 137 RIRGEGGTRFADVYYVAPSGKKLRSTVEVQKYLNDNSEYIGEGVKLSQFSFQIPKPLQDD 196
Query: 217 YVKKRP-KIVNPNDEASVVTTKSVKPEEVSPIAWAAPSVHQEGEAG 261
YV+KRP ++++ S+ T + +E +P+AW +P H + G
Sbjct: 197 YVRKRPARLLD-----SIDNTNTPVAKEANPLAWISPDDHISLQLG 237
>AT5G35338.2 | chr5:13549343-13550124 REVERSE LENGTH=156
Length = 155
Score = 133 bits (334), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/147 (47%), Positives = 91/147 (61%), Gaps = 11/147 (7%)
Query: 81 VQCAKCFKWRLIPTKEKYEEIRECIIQEPFECERAREWRPDVTCNDPEDISQDGSRL--W 138
VQC C KWRLIP+ + Y I+E +Q PF C W P+++CN P QDG+ W
Sbjct: 2 VQCTDCKKWRLIPSMQHYNIIKETQLQTPFVCGTTSGWTPNMSCNVP----QDGTTCDTW 57
Query: 139 AIDKPNIALPPPGWERQIRIRGEGGTKFADVYYTSPTGRKLRSLVEIDRYLLENPDYVAQ 198
P+I P GW R + IR E TKFADVYY P+G +LRS E+ +L +P+YV +
Sbjct: 58 ----PSIPPIPTGWSRSVHIRSES-TKFADVYYFPPSGERLRSSAEVQSFLDNHPEYVRE 112
Query: 199 GVTLTQFSFQIPRPLRQDYVKKRPKIV 225
GV +QFSFQIP+PL +YVKKR + V
Sbjct: 113 GVNRSQFSFQIPKPLDDNYVKKRTRPV 139
>AT4G22745.1 | chr4:11947421-11948514 REVERSE LENGTH=205
Length = 204
Score = 111 bits (278), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 89/154 (57%), Gaps = 11/154 (7%)
Query: 62 LQKSANNPNRGMPSIGAFTVQCAKCFKWRLIPTKEKYEEIRECIIQEPFECERAREWRPD 121
+QK A P R SI F VQC KC KWR I T+++YE+IR + ++PF C+ +
Sbjct: 41 VQKKAGTPGR---SIDVFAVQCEKCMKWRKIDTQDEYEDIRSRVQEDPFFCKT----KEG 93
Query: 122 VTCNDPEDISQDGSRLWAIDKPNIALPPPGWERQIRIRGEGGTKFADVYYTSPTGRKLRS 181
V+C D D++ D SR W IDKP + P G++R + +R + D YY +PTG+KL+S
Sbjct: 94 VSCEDVGDLNYDSSRTWVIDKPGLPRTPRGFKRSLILRKDYSK--MDAYYITPTGKKLKS 151
Query: 182 LVEIDRYLLENPDYVAQGVTLTQFSFQIPRPLRQ 215
EI ++ N DY + L F+F +P+ + +
Sbjct: 152 RNEIAAFIDANQDY--KYALLGDFNFTVPKVMEE 183
>AT3G63030.1 | chr3:23295394-23296425 FORWARD LENGTH=187
Length = 186
Score = 107 bits (268), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 89/149 (59%), Gaps = 9/149 (6%)
Query: 76 IGAFTVQCAKCFKWRLIPTKEKYEEIRECIIQEPFECERAREWRPDVTCNDPEDISQDGS 135
I + QC C KWR+I ++E+YE+IR ++++PF C++ + ++C +P DI D S
Sbjct: 25 IDTYAAQCDNCHKWRVIDSQEEYEDIRSKMLEDPFNCQKKQ----GMSCEEPADIDYDSS 80
Query: 136 RLWAIDKPNIALPPPGWERQIRIRGEGGTKFADVYYTSPTGRKLRSLVEIDRYLLENPDY 195
R W IDKP + P G++R + +R + D YY +PTG+KLRS EI ++ NP++
Sbjct: 81 RTWVIDKPGLPKTPKGFKRSLVLRKDYSK--MDTYYFTPTGKKLRSRNEIAAFVEANPEF 138
Query: 196 VAQGVTLTQFSFQIPRPLRQDYVKKRPKI 224
+ L F+F +P+ + +D V PK+
Sbjct: 139 --RNAPLGDFNFTVPK-VMEDTVPPDPKL 164
>AT4G00416.1 | chr4:179022-179513 FORWARD LENGTH=164
Length = 163
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 70/137 (51%), Gaps = 18/137 (13%)
Query: 76 IGAFTVQCAKCFKWRLIPTKEKYEEIRECIIQEPFECERAREWRPDVTCNDPEDISQDGS 135
I ++ QC KC K R I ++E YEEIR +++ FEC+R C +P D+ +
Sbjct: 9 IDSYAAQCWKCLKVRSIESQEDYEEIRSKTLEKFFECKR---------CEEPGDMVMNFD 59
Query: 136 RL---WAIDKPNIALPPPGWERQIRIRGEGGTKFADVYYTS--PTGRKLRSLVEIDRYLL 190
L W D+ +I P G +R + +R DVYY S P ++ +S+ E+ ++
Sbjct: 60 SLTMRWFQDEHSIPKTPQGLKRVLVVRTNCVK--VDVYYESLAPRRKRFKSIKEVATFIE 117
Query: 191 ENPDYVAQGVTLTQFSF 207
+ ++ + +TL + SF
Sbjct: 118 DKEEF--KDMTLEEVSF 132
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.311 0.130 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,594,946
Number of extensions: 329154
Number of successful extensions: 628
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 621
Number of HSP's successfully gapped: 5
Length of query: 315
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 217
Effective length of database: 8,419,801
Effective search space: 1827096817
Effective search space used: 1827096817
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 112 (47.8 bits)