BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0492900 Os09g0492900|Os09g0492900
         (156 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0492900  Conserved hypothetical protein                      243   3e-65
Os09g0493000  Conserved hypothetical protein                       89   1e-18

>Os09g0492900 Conserved hypothetical protein
          Length = 156

 Score =  243 bits (621), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 125/138 (90%), Positives = 125/138 (90%)

Query: 1   MVMDLDGTMARLEAPVAARVALGGDAYSCFVCGADELDYGAPARAMGDDEALQPGQLYFV 60
           MVMDLDGTMARLEAPVAARVALGGDAYSCFVCGADELDYGAPARAMGDDEALQPGQLYFV
Sbjct: 1   MVMDLDGTMARLEAPVAARVALGGDAYSCFVCGADELDYGAPARAMGDDEALQPGQLYFV 60

Query: 61  LPVSALRRPLSGHDMXXXXXXXXXXXXXIGVPTSSATRRKDDRDGAAASGKRRRTSRVAP 120
           LPVSALRRPLSGHDM             IGVPTSSATRRKDDRDGAAASGKRRRTSRVAP
Sbjct: 61  LPVSALRRPLSGHDMAALAVKASAALSSIGVPTSSATRRKDDRDGAAASGKRRRTSRVAP 120

Query: 121 LAVVSGIDAHATPLMAKT 138
           LAVVSGIDAHATPLMAKT
Sbjct: 121 LAVVSGIDAHATPLMAKT 138



>Os09g0493000 Conserved hypothetical protein
          Length = 201

 Score = 89.0 bits (219), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/145 (43%), Positives = 78/145 (53%), Gaps = 14/145 (9%)

Query: 2   VMDLDGTMARLEAP-VAARVALGGD-----AYSCFVCGADELDYGAPARAMGDDEALQPG 55
           V+  DG+MA+  AP    R ALGG+     A +CFVC +DEL + AP RAM   +AL+PG
Sbjct: 24  VVFRDGSMAQFAAPGSTVRDALGGERASSSASTCFVCCSDELRFDAPPRAMAAHDALRPG 83

Query: 56  QLYFVLPVSALRRPLSGHDMXXXXXXXXXXXXXIGVPTSSATRRKDDRDGAAASGKRR-- 113
           QLYFVLPVSALRRPLSG DM                   S++        A  +GK+R  
Sbjct: 84  QLYFVLPVSALRRPLSGQDMAALAVKAIAALGASATAAGSSSGVSSRGKNARPAGKQRPQ 143

Query: 114 RTSRVAPLA------VVSGIDAHAT 132
            T+RVAPL       V  G D+  T
Sbjct: 144 ATARVAPLVAAGADHVYGGYDSQKT 168



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.133    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,751,102
Number of extensions: 188553
Number of successful extensions: 697
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 696
Number of HSP's successfully gapped: 6
Length of query: 156
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 64
Effective length of database: 12,232,113
Effective search space: 782855232
Effective search space used: 782855232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 151 (62.8 bits)