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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0492900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.74 (0.0589) R2 : 0.402
β1 : 3.99 (0.231) R2dD : 0.509 R2D : 0.0864
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.49 (0.236) R2dE : 0.256 R2E : -0.28
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.62 (0.148) R2dN8 : 0.312 R2N8 : -0.138
σ : 1.04
deviance : 495.53
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 1.51
memory length : 26371
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
502.4 1.05 3.92 2.24 0.358 2.5 0.624 4.76 0.965 2.86 1.14 11498 -- --
521.31 1.06 3.83 3 0.0611 1.78 -0.611 -- 1.05 14.6 1.75 16274 -- --
503.67 1.05 3.92 2.21 0.354 2.51 -- 4.83 0.961 3.18 1.143 11506 -- --
501.35 1.04 3.8 3.58 0.137 2.27 -- -- 1.47 14.4 1.77 26365 -- --
504.45 1.05 3.92 2.24 -- 2.64 -- 5.04 0.951 -- 1.262 11753 -- --
611.43 1.16 3.91 2.76 0.257 -- 0.414 -- 0.674 3.35 -- -- -- --
611.94 1.16 3.91 2.76 0.262 -- -- -- 0.672 3.71 -- -- -- --
495.53 1.04 3.74 3.99 -- 2.49 -- -- 1.62 -- 1.51 26371 -- --
703.81 1.24 3.9 -- 0.316 1.8 -- -- 0.695 2.36 8.495 28771 -- --
615.75 1.16 3.91 2.77 -- -- -- -- 0.679 -- -- -- -- --
812.22 1.33 3.98 -- 0.316 -- -- -- 0.365 3.63 -- -- -- --
708.87 1.24 3.91 -- -- 1.86 -- -- 0.696 -- 8.493 28937 -- --
817.78 1.33 3.98 -- -- -- -- -- 0.372 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 480.92 humidity 80 43200 > th dose dependent rect. 20 2
3 482.12 humidity 80 43200 > th dose dependent rect. 19 4
13 486.76 humidity 70 43200 > th dose dependent rect. 18 1
20 488.46 humidity 60 43200 < th dose independent rect. 14 1
31 489.98 humidity 60 43200 > th dose independent rect. 14 2
36 490.51 humidity 80 43200 < th dose independent rect. 13 8
39 490.72 humidity 80 43200 > th dose dependent sin 17 NA
41 490.76 humidity 90 43200 < th dose independent rect. 21 1
46 491.07 humidity 80 43200 > th dose independent rect. 12 9
47 491.09 humidity 80 43200 > th dose dependent rect. 7 19
61 491.44 humidity 80 43200 > th dose dependent rect. 3 21
107 492.25 humidity 80 43200 > th dose independent rect. 8 13
134 492.73 humidity 90 43200 < th dose independent rect. 1 22
140 492.91 humidity 90 43200 < th dose independent rect. 11 21
149 493.06 humidity 90 43200 < th dose independent rect. 20 18
150 493.07 humidity 90 43200 < th dose independent rect. 20 20
160 493.14 humidity 80 43200 > th dose dependent rect. 15 22
170 493.21 humidity 80 43200 > th dose independent sin 20 NA
214 493.44 humidity 90 43200 < th dose independent rect. 15 18
224 493.48 humidity 90 43200 < th dose independent no NA NA
232 493.50 humidity 90 43200 < th dose independent rect. 17 16
238 493.52 humidity 90 43200 < th dose independent rect. 6 23
260 493.64 humidity 80 43200 < th dose independent sin 20 NA
302 493.78 humidity 80 43200 > th dose dependent no NA NA
319 493.87 humidity 90 43200 < th dose independent rect. 1 13
332 493.97 humidity 90 43200 < th dose independent sin 5 NA
347 494.08 humidity 90 43200 < th dose independent sin 16 NA
392 494.33 humidity 90 43200 < th dose independent rect. 3 7
408 494.45 humidity 90 43200 < th dose independent rect. 11 15
510 495.01 radiation 10 14400 < th dose independent rect. 15 17
511 495.02 humidity 70 43200 < th dose independent rect. 17 1
536 495.12 humidity 90 43200 < th dose independent rect. 17 9
556 495.19 radiation 10 14400 < th dose independent sin 12 NA
637 495.60 humidity 90 43200 > th dose independent rect. 20 2
651 495.68 humidity 90 43200 > th dose independent rect. 1 21
678 495.89 humidity 90 43200 < th dose independent rect. 4 4
702 496.00 temperature 15 43200 > th dose dependent rect. 19 1
715 496.06 temperature 30 43200 < th dose dependent rect. 19 1
811 496.68 humidity 70 43200 > th dose independent rect. 17 1
814 496.69 humidity 90 43200 > th dose independent rect. 1 13
815 496.69 humidity 90 43200 > th dose independent rect. 4 23
821 496.70 humidity 90 43200 > th dose independent rect. 1 15
837 496.77 humidity 90 43200 > th dose independent rect. 9 22
840 496.78 humidity 90 43200 > th dose independent rect. 19 21
841 496.78 humidity 90 43200 > th dose independent rect. 17 23
870 496.87 humidity 90 43200 > th dose independent rect. 1 17
877 496.89 humidity 90 43200 > th dose independent no NA NA
897 496.92 humidity 90 43200 > th dose independent rect. 6 23
901 496.93 humidity 90 43200 > th dose independent rect. 15 23
915 496.97 humidity 80 43200 > th dose dependent sin 2 NA
916 496.98 humidity 90 43200 > th dose independent rect. 4 3
972 497.17 humidity 90 43200 > th dose independent rect. 9 18