BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0482000 Os09g0482000|AK107144
(396 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0482000 UAS domain containing protein 675 0.0
Os10g0520600 UAS domain containing protein 79 4e-15
>Os09g0482000 UAS domain containing protein
Length = 396
Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/396 (85%), Positives = 338/396 (85%)
Query: 1 MPSPTXXXXXXXXXXXXXXDTLRNSCHDFARSLARLPASIMDGLXXXXXXXXXXXXDTQP 60
MPSPT DTLRNSCHDFARSLARLPASIMDGL DTQP
Sbjct: 1 MPSPTSSASAAARGSAGAGDTLRNSCHDFARSLARLPASIMDGLSRSMARRSRRPRDTQP 60
Query: 61 HXXXXXXXXXXXXXXXXXXRRYGGRHPFFYGCRLAEALGIARREGRLVFVYLHDAGGGGN 120
H RRYGGRHPFFYGCRLAEALGIARREGRLVFVYLHDAGGGGN
Sbjct: 61 HPPLPPPLLPEELFFAEFERRYGGRHPFFYGCRLAEALGIARREGRLVFVYLHDAGGGGN 120
Query: 121 PYADQFCTGTMCSDVVVEFLDANFVSWGAVAGRGEGAAMVAALRPGSFPFCAVVSPVSDE 180
PYADQFCTGTMCSDVVVEFLDANFVSWGAVAGRGEGAAMVAALRPGSFPFCAVVSPVSDE
Sbjct: 121 PYADQFCTGTMCSDVVVEFLDANFVSWGAVAGRGEGAAMVAALRPGSFPFCAVVSPVSDE 180
Query: 181 SIVILQQVEGPVSPSELVDILQRTIDEQRASSRQSWPDEQLAAAVRASRADEEERMRSVA 240
SIVILQQVEGPVSPSELVDILQRTIDEQRASSRQSWPDEQLAAAVRASRADEEERMRSVA
Sbjct: 181 SIVILQQVEGPVSPSELVDILQRTIDEQRASSRQSWPDEQLAAAVRASRADEEERMRSVA 240
Query: 241 LRLRQEQDAAYLESLRKDQEKERSRKSVQEGSAKPKASNVLRPRYPGQSAREPXXXXXXX 300
LRLRQEQDAAYLESLRKDQEKERSRKSVQEGSAKPKASNVLRPRYPGQSAREP
Sbjct: 241 LRLRQEQDAAYLESLRKDQEKERSRKSVQEGSAKPKASNVLRPRYPGQSAREPNKAAQAR 300
Query: 301 XXXXXXXGTVASHRAEANTKIMIRFPNGERRQQAFHHTDTIREIYRYVDSLGIPGIGNYQ 360
GTVASHRAEANTKIMIRFPNGERRQQAFHHTDTIREIYRYVDSLGIPGIGNYQ
Sbjct: 301 APAQNQNGTVASHRAEANTKIMIRFPNGERRQQAFHHTDTIREIYRYVDSLGIPGIGNYQ 360
Query: 361 LVRSYPRKTYGRQQLEMSLQDAGFYPSVTLYIEQLQ 396
LVRSYPRKTYGRQQLEMSLQDAGFYPSVTLYIEQLQ
Sbjct: 361 LVRSYPRKTYGRQQLEMSLQDAGFYPSVTLYIEQLQ 396
>Os10g0520600 UAS domain containing protein
Length = 369
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 52/75 (69%)
Query: 319 TKIMIRFPNGERRQQAFHHTDTIREIYRYVDSLGIPGIGNYQLVRSYPRKTYGRQQLEMS 378
T+++IRFP GER+++ F+ + TI +Y YVDSL Y LV ++PR TYG ++L +
Sbjct: 292 TRVLIRFPTGERKERRFNSSTTITSLYDYVDSLDCLKAEKYSLVSNFPRVTYGPEKLSQT 351
Query: 379 LQDAGFYPSVTLYIE 393
L++AG +P +L+IE
Sbjct: 352 LEEAGLHPQASLFIE 366
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.134 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,562,503
Number of extensions: 469349
Number of successful extensions: 1762
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1758
Number of HSP's successfully gapped: 2
Length of query: 396
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 293
Effective length of database: 11,657,759
Effective search space: 3415723387
Effective search space used: 3415723387
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)