BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0481300 Os09g0481300|AY723295
         (133 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0481300  Hypothetical protein                                267   1e-72
Os08g0497900  Conserved hypothetical protein                      170   2e-43

>Os09g0481300 Hypothetical protein
          Length = 133

 Score =  267 bits (683), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 133/133 (100%), Positives = 133/133 (100%)

Query: 1   ELLSLQSDMDQLFLEKMEAETQCFILTRASQAWNPLTEDQAAIFDIQKSLPEDHKQLEAK 60
           ELLSLQSDMDQLFLEKMEAETQCFILTRASQAWNPLTEDQAAIFDIQKSLPEDHKQLEAK
Sbjct: 1   ELLSLQSDMDQLFLEKMEAETQCFILTRASQAWNPLTEDQAAIFDIQKSLPEDHKQLEAK 60

Query: 61  LRHTENRALMLEEMVEKLEAQCKDLARTSEILKLQARASRASLFCSVQFVLLFIAVGTFL 120
           LRHTENRALMLEEMVEKLEAQCKDLARTSEILKLQARASRASLFCSVQFVLLFIAVGTFL
Sbjct: 61  LRHTENRALMLEEMVEKLEAQCKDLARTSEILKLQARASRASLFCSVQFVLLFIAVGTFL 120

Query: 121 VRLWPSSSEFVPT 133
           VRLWPSSSEFVPT
Sbjct: 121 VRLWPSSSEFVPT 133



>Os08g0497900 Conserved hypothetical protein
          Length = 462

 Score =  170 bits (431), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 81/127 (63%), Positives = 102/127 (80%)

Query: 7   SDMDQLFLEKMEAETQCFILTRASQAWNPLTEDQAAIFDIQKSLPEDHKQLEAKLRHTEN 66
           S + +LFLEK EAE +  ILTRA+Q W PL +DQ A+++ QKSL  D+KQLE KL+HT+N
Sbjct: 336 SYLGRLFLEKTEAEIKSIILTRAAQTWAPLVDDQIALYNAQKSLSGDYKQLELKLQHTKN 395

Query: 67  RALMLEEMVEKLEAQCKDLARTSEILKLQARASRASLFCSVQFVLLFIAVGTFLVRLWPS 126
           RA MLEEM EKL A+C+ L+ +SE+L+LQ+RASR SLFC +QFVLLF AVGTFL RL PS
Sbjct: 396 RAAMLEEMAEKLRAECRVLSGSSEVLRLQSRASRVSLFCFIQFVLLFTAVGTFLARLLPS 455

Query: 127 SSEFVPT 133
            +E+VPT
Sbjct: 456 PTEYVPT 462



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.131    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,427,283
Number of extensions: 102544
Number of successful extensions: 450
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 449
Number of HSP's successfully gapped: 3
Length of query: 133
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 43
Effective length of database: 12,336,541
Effective search space: 530471263
Effective search space used: 530471263
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 150 (62.4 bits)