Os09g0481300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os09g0481300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46.55 | 0.321 | 8.76 | 1.14 | 0.927 | 0.59 | -0.375 | -0.262 | 0.333 | 1.1 | 80.09 | 734 | -- | -- |
| 46.25 | 0.317 | 8.76 | 1.12 | 0.996 | 0.637 | -0.33 | -- | 0.341 | 1.4 | 80.06 | 854 | -- | -- |
| 46.64 | 0.318 | 8.76 | 1.14 | 1 | 0.638 | -- | -0.0503 | 0.343 | 1.41 | 80.04 | 861 | -- | -- |
| 46.65 | 0.318 | 8.76 | 1.13 | 1 | 0.642 | -- | -- | 0.342 | 1.42 | 80.1 | 867 | -- | -- |
| 64.89 | 0.377 | 8.75 | 1.2 | -- | 0.576 | -- | 0.0469 | 0.342 | -- | 75.99 | 1712 | -- | -- |
| 53.87 | 0.344 | 8.76 | 1.1 | 0.888 | -- | -0.315 | -- | 0.311 | 2.58 | -- | -- | -- | -- |
| 54.22 | 0.345 | 8.76 | 1.11 | 0.887 | -- | -- | -- | 0.313 | 2.57 | -- | -- | -- | -- |
| 61.91 | 0.366 | 8.73 | 1.11 | -- | 0.626 | -- | -- | 0.386 | -- | 84 | 112 | -- | -- |
| 79.75 | 0.416 | 8.77 | -- | 0.981 | 0.524 | -- | -- | 0.279 | 1.74 | 82 | 942 | -- | -- |
| 100.35 | 0.468 | 8.75 | 1.15 | -- | -- | -- | -- | 0.335 | -- | -- | -- | -- | -- |
| 86.69 | 0.436 | 8.79 | -- | 0.909 | -- | -- | -- | 0.189 | 2.59 | -- | -- | -- | -- |
| 93.42 | 0.45 | 8.77 | -- | -- | 0.649 | -- | -- | 0.233 | -- | 83.37 | 119 | -- | -- |
| 135.09 | 0.543 | 8.78 | -- | -- | -- | -- | -- | 0.208 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.29 | radiation | 20 | 1440 | < th | dose dependent | rect. | 21 | 8 |
| 4 | 45.56 | humidity | 80 | 720 | > th | dose independent | rect. | 8 | 14 |
| 7 | 45.72 | humidity | 80 | 720 | > th | dose independent | rect. | 8 | 16 |
| 14 | 45.90 | humidity | 80 | 720 | > th | dose independent | rect. | 8 | 21 |
| 20 | 45.95 | humidity | 80 | 720 | > th | dose independent | sin | 20 | NA |
| 28 | 46.04 | humidity | 60 | 14400 | > th | dose independent | rect. | 21 | 9 |
| 29 | 46.04 | humidity | 80 | 720 | < th | dose independent | rect. | 9 | 16 |
| 36 | 46.08 | humidity | 80 | 720 | < th | dose independent | rect. | 9 | 13 |
| 48 | 46.20 | radiation | 10 | 1440 | < th | dose independent | rect. | 21 | 8 |
| 50 | 46.21 | humidity | 80 | 720 | < th | dose independent | rect. | 11 | 11 |
| 53 | 46.22 | humidity | 80 | 720 | < th | dose independent | rect. | 11 | 14 |
| 57 | 46.23 | humidity | 80 | 720 | > th | dose independent | rect. | 4 | 18 |
| 62 | 46.24 | humidity | 80 | 720 | > th | dose independent | rect. | 23 | 23 |
| 71 | 46.27 | humidity | 80 | 720 | < th | dose independent | sin | 20 | NA |
| 108 | 46.43 | humidity | 80 | 720 | > th | dose independent | rect. | 1 | 23 |
| 118 | 46.47 | humidity | 80 | 720 | > th | dose independent | rect. | 4 | 23 |
| 139 | 46.55 | humidity | 80 | 720 | > th | dose independent | rect. | 11 | 23 |
| 140 | 46.56 | humidity | 80 | 720 | > th | dose independent | no | NA | NA |
| 153 | 46.58 | humidity | 70 | 720 | > th | dose dependent | rect. | 9 | 15 |
| 157 | 46.59 | humidity | 80 | 720 | > th | dose independent | rect. | 18 | 23 |
| 178 | 46.64 | humidity | 80 | 720 | < th | dose independent | rect. | 3 | 19 |
| 203 | 46.69 | humidity | 80 | 720 | < th | dose independent | rect. | 1 | 21 |
| 228 | 46.74 | humidity | 80 | 720 | < th | dose independent | rect. | 11 | 23 |
| 231 | 46.77 | radiation | 20 | 14400 | < th | dose independent | rect. | 21 | 9 |
| 241 | 46.79 | humidity | 80 | 720 | > th | dose independent | rect. | 21 | 23 |
| 274 | 46.86 | humidity | 80 | 720 | < th | dose independent | no | NA | NA |
| 275 | 46.88 | radiation | 10 | 720 | < th | dose dependent | rect. | 11 | 13 |
| 278 | 46.89 | radiation | 10 | 720 | < th | dose dependent | rect. | 13 | 11 |
| 285 | 46.91 | humidity | 80 | 720 | < th | dose independent | rect. | 19 | 23 |
| 301 | 46.96 | humidity | 80 | 720 | < th | dose independent | rect. | 16 | 23 |
| 313 | 47.00 | radiation | 10 | 720 | < th | dose dependent | sin | 19 | NA |
| 327 | 47.04 | humidity | 70 | 720 | > th | dose dependent | sin | 20 | NA |
| 335 | 47.05 | radiation | 20 | 90 | < th | dose dependent | rect. | 5 | 15 |
| 352 | 47.12 | humidity | 80 | 720 | < th | dose independent | rect. | 13 | 23 |
| 368 | 47.18 | humidity | 50 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 393 | 47.31 | radiation | 10 | 720 | < th | dose dependent | rect. | 13 | 4 |
| 395 | 47.31 | humidity | 50 | 90 | > th | dose dependent | rect. | 5 | 15 |
| 396 | 47.31 | radiation | 1 | 90 | < th | dose dependent | rect. | 5 | 15 |
| 419 | 47.39 | humidity | 70 | 720 | > th | dose dependent | rect. | 4 | 20 |
| 421 | 47.40 | temperature | 10 | 1440 | > th | dose independent | rect. | 21 | 9 |
| 424 | 47.40 | temperature | 30 | 1440 | < th | dose independent | rect. | 21 | 9 |
| 429 | 47.40 | humidity | 50 | 1440 | > th | dose independent | rect. | 21 | 9 |
| 435 | 47.40 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 21 | 9 |
| 447 | 47.40 | temperature | 10 | 1440 | > th | dose independent | rect. | 6 | 15 |
| 453 | 47.40 | radiation | 10 | 720 | < th | dose dependent | rect. | 11 | 6 |
| 469 | 47.43 | humidity | 80 | 720 | > th | dose independent | rect. | 11 | 4 |
| 503 | 47.52 | radiation | 1 | 90 | < th | dose independent | rect. | 5 | 15 |
| 535 | 47.59 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 557 | 47.64 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 10 |
| 583 | 47.68 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 593 | 47.69 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 606 | 47.70 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 10 |
| 651 | 47.77 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 9 |
| 653 | 47.77 | radiation | 20 | 90 | < th | dose dependent | rect. | 11 | 9 |
| 662 | 47.79 | humidity | 80 | 1440 | < th | dose independent | rect. | 3 | 12 |
| 684 | 47.82 | humidity | 80 | 1440 | > th | dose independent | rect. | 1 | 15 |
| 703 | 47.85 | humidity | 80 | 1440 | < th | dose independent | rect. | 1 | 14 |
| 710 | 47.86 | radiation | 1 | 90 | > th | dose independent | rect. | 8 | 10 |
| 723 | 47.87 | radiation | 1 | 720 | > th | dose independent | rect. | 11 | 8 |
| 770 | 47.91 | wind | 1 | 10 | > th | dose independent | rect. | 4 | 16 |
| 863 | 48.02 | wind | 1 | 90 | > th | dose independent | rect. | 4 | 16 |
| 880 | 48.04 | humidity | 50 | 90 | > th | dose independent | rect. | 5 | 15 |
| 897 | 48.04 | radiation | 40 | 270 | < th | dose dependent | rect. | 11 | 21 |
| 900 | 48.05 | radiation | 1 | 720 | < th | dose independent | rect. | 11 | 16 |
| 903 | 48.06 | radiation | 1 | 720 | < th | dose independent | sin | 20 | NA |
| 933 | 48.07 | radiation | 20 | 90 | < th | dose dependent | sin | 21 | NA |
| 939 | 48.08 | radiation | 1 | 720 | < th | dose independent | rect. | 11 | 14 |
| 945 | 48.09 | radiation | 1 | 720 | > th | dose independent | sin | 20 | NA |
| 947 | 48.09 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 18 |
| 997 | 48.13 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 20 |