BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0479400 Os09g0479400|AK109596
(575 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0479400 Phenylalanyl-tRNA synthetase, class IIc family... 936 0.0
Os09g0479300 Phenylalanyl-tRNA synthetase, class IIc family... 352 4e-97
>Os09g0479400 Phenylalanyl-tRNA synthetase, class IIc family protein
Length = 575
Score = 936 bits (2419), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 463/559 (82%), Positives = 463/559 (82%)
Query: 17 TEGEEKPPLXXXXXXXXXXXRAIVADGDGREANAAAPGANWCGEEEVPAHAAEGGTVAAM 76
TEGEEKPPL RAIVADGDGREANAAAPGANWCGEEEVPAHAAEGGTVAAM
Sbjct: 17 TEGEEKPPLEEVEVEVEVVVRAIVADGDGREANAAAPGANWCGEEEVPAHAAEGGTVAAM 76
Query: 77 VDENAAAPAAEGDTVXXXXXXXXXXXXDMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 136
VDENAAAPAAEGDTV DM
Sbjct: 77 VDENAAAPAAEGDTVAAAKGEAPAAEGDMVVAAKGAAHAAAEGDTVAAAAVAGENEAAHA 136
Query: 137 XXXXXXXXXXXXXXKGEALQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVKWLKHYSSLQ 196
KGEALQ GVKWLKHYSSLQ
Sbjct: 137 PAAGGNTVAAAADVKGEALQAIPVADEAAAVAEGVNAIAAAEREEDDEGVKWLKHYSSLQ 196
Query: 197 SILTVGDGDFSFSLALATAFGSGDNLVATSLDTIEDLRGKYSKAESNIMELKRMGATVLH 256
SILTVGDGDFSFSLALATAFGSGDNLVATSLDTIEDLRGKYSKAESNIMELKRMGATVLH
Sbjct: 197 SILTVGDGDFSFSLALATAFGSGDNLVATSLDTIEDLRGKYSKAESNIMELKRMGATVLH 256
Query: 257 GIDAKRMKDHTNLKLRRFDRIIFNFPHAGFKGKEDDLHMINLHRELVWGFFQNARHLLRP 316
GIDAKRMKDHTNLKLRRFDRIIFNFPHAGFKGKEDDLHMINLHRELVWGFFQNARHLLRP
Sbjct: 257 GIDAKRMKDHTNLKLRRFDRIIFNFPHAGFKGKEDDLHMINLHRELVWGFFQNARHLLRP 316
Query: 317 YGEIHVSHKIGLPYDRWCIEHLAYESSLTMIAKVDFRKEDYPGYNQKRGDSAKCDQPFEL 376
YGEIHVSHKIGLPYDRWCIEHLAYESSLTMIAKVDFRKEDYPGYNQKRGDSAKCDQPFEL
Sbjct: 317 YGEIHVSHKIGLPYDRWCIEHLAYESSLTMIAKVDFRKEDYPGYNQKRGDSAKCDQPFEL 376
Query: 377 GACCTFMFMRDLTRLKRARRNRINASSLGIQAQHDMPFHPRPLVPAYPQPHFPSQVNAAH 436
GACCTFMFMRDLTRLKRARRNRINASSLGIQAQHDMPFHPRPLVPAYPQPHFPSQVNAAH
Sbjct: 377 GACCTFMFMRDLTRLKRARRNRINASSLGIQAQHDMPFHPRPLVPAYPQPHFPSQVNAAH 436
Query: 437 RQVPPEHYPLGIAHGQEPGFLDNFGGIERYPYQRGAIGTVIGMPGTPSPMRGITRSSFPA 496
RQVPPEHYPLGIAHGQEPGFLDNFGGIERYPYQRGAIGTVIGMPGTPSPMRGITRSSFPA
Sbjct: 437 RQVPPEHYPLGIAHGQEPGFLDNFGGIERYPYQRGAIGTVIGMPGTPSPMRGITRSSFPA 496
Query: 497 PQEQPWRQERYIMDPEVRDDHYHFAREYPRNLQEYEMERQVMPGGTRLRYVDFLENRYEE 556
PQEQPWRQERYIMDPEVRDDHYHFAREYPRNLQEYEMERQVMPGGTRLRYVDFLENRYEE
Sbjct: 497 PQEQPWRQERYIMDPEVRDDHYHFAREYPRNLQEYEMERQVMPGGTRLRYVDFLENRYEE 556
Query: 557 SVRRQEHLRRLIAEYGGYD 575
SVRRQEHLRRLIAEYGGYD
Sbjct: 557 SVRRQEHLRRLIAEYGGYD 575
>Os09g0479300 Phenylalanyl-tRNA synthetase, class IIc family protein
Length = 470
Score = 352 bits (904), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 207/403 (51%), Positives = 254/403 (63%), Gaps = 30/403 (7%)
Query: 186 VKWLKHYSSLQSILTVGDGDFSFSLALATAFGSGDNLVATSLDTIEDLRGKYSKAESNIM 245
VKWLKHYSS+QSIL VGDGDFSFS ALA AF SG+NLV+TSLD+ E LRGKY+ AESNIM
Sbjct: 73 VKWLKHYSSMQSILVVGDGDFSFSRALAVAFCSGENLVSTSLDSYEALRGKYANAESNIM 132
Query: 246 ELKRMGATVLHGIDAKRMKDHTNLKLRRFDRIIFNFPHAGFKGKEDDLHMINLHRELVWG 305
LK MGAT LHG+DAK MK HT+LK+RRFDRI+FN PHAGFK KE D+ MINLH++LV G
Sbjct: 133 VLKLMGATTLHGVDAKTMKHHTDLKMRRFDRIVFNLPHAGFKAKEGDMRMINLHKDLVRG 192
Query: 306 FFQNARHLLRPYGEIHVSHKIGLPYDRWCIEHLAYESSLTMIAKVDFRKEDYPGYNQKRG 365
FF+NAR LLRP GEIHVSHK G Y+ W IE LA ESSL M+ KVDF EDYPGYN KRG
Sbjct: 193 FFRNARCLLRPSGEIHVSHKRGKVYENWEIEKLASESSLIMVEKVDFHIEDYPGYNHKRG 252
Query: 366 DSAKCDQPFELGACCTFMF-MRDLTRLKRARRNRINA-SSLGIQAQHDMPFHPRPLVPAY 423
D +CD+PF LG CC F F +R+ + K+ +I + SLG H HP L +
Sbjct: 253 DGPRCDEPFPLGPCCIFKFSIRNHKKQKKCHSKKIGSIPSLG--GSH---VHPEILASDW 307
Query: 424 --PQPHFPSQVNAAHRQVPPEHYPLGIAHGQEPGFLDNFGGI---ERYPYQRGAIGTVIG 478
QP P VNA + V + Y L IA +PGF NF G+ Q I ++
Sbjct: 308 SPSQPFRP--VNAVNMPVTFDPYSLRIAQSHQPGFPVNFVGLWTAAACSLQHCNIHPMLN 365
Query: 479 ----------MPGTPSPMRG-ITRSSFPAPQEQPWRQERYIMDPEVRDDHYHFAREYPRN 527
+ +P G IT +S APQEQP + ++ P Y ARE+ N
Sbjct: 366 IVRPSLHLLPIASIIAPQMGRITSTSLFAPQEQP----KPVLRPLQSVSSYDLAREHQMN 421
Query: 528 L-QEYEMERQVMPGGTRLRYVDFLENRYEESVRRQEHLRRLIA 569
L +E+EM Q MP GT L Y +FLE + + +++ L+ +I
Sbjct: 422 LRREFEMRGQTMPAGTSLDYFEFLEYLFRDPAEKEKWLQTMIT 464
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.137 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,912,550
Number of extensions: 803979
Number of successful extensions: 2272
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 2271
Number of HSP's successfully gapped: 3
Length of query: 575
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 469
Effective length of database: 11,501,117
Effective search space: 5394023873
Effective search space used: 5394023873
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 159 (65.9 bits)