Os09g0479300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Phenylalanyl-tRNA synthetase, class IIc family protein.
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Os09g0479300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Phenylalanyl-tRNA synthetase, class IIc family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 363.04 | 0.895 | 3.28 | 0.035 | 0.103 | 0.623 | 1.02 | 0.37 | -0.367 | 6.94 | 1004 | 75 | -- | -- |
| 362.09 | 0.893 | 3.28 | 0.0135 | 0.0871 | 0.632 | 1.12 | -- | -0.359 | 6.5 | 1004 | 74 | -- | -- |
| 364.24 | 0.896 | 3.28 | 0.0159 | 0.113 | 0.608 | -- | 0.414 | -0.378 | 4.67 | 1004 | 75 | -- | -- |
| 365.08 | 0.896 | 3.28 | 0.0276 | 0.105 | 0.619 | -- | -- | -0.367 | 4.61 | 1004 | 75 | -- | -- |
| 364.91 | 0.895 | 3.29 | 0.0209 | -- | 0.603 | -- | 0.393 | -0.377 | -- | 1004 | 74 | -- | -- |
| 390.74 | 0.927 | 3.32 | 0.0216 | 0.059 | -- | 0.875 | -- | -0.538 | 6.95 | -- | -- | -- | -- |
| 392.7 | 0.928 | 3.32 | 0.0369 | 0.0655 | -- | -- | -- | -0.54 | 5.77 | -- | -- | -- | -- |
| 365.67 | 0.895 | 3.29 | 0.0317 | -- | 0.613 | -- | -- | -0.366 | -- | 1004 | 74 | -- | -- |
| 365.1 | 0.895 | 3.28 | -- | 0.106 | 0.619 | -- | -- | -0.37 | 4.6 | 1004 | 75 | -- | -- |
| 392.92 | 0.926 | 3.32 | 0.039 | -- | -- | -- | -- | -0.539 | -- | -- | -- | -- | -- |
| 392.74 | 0.927 | 3.32 | -- | 0.0661 | -- | -- | -- | -0.544 | 5.74 | -- | -- | -- | -- |
| 365.69 | 0.894 | 3.29 | -- | -- | 0.614 | -- | -- | -0.369 | -- | 1004 | 75 | -- | -- |
| 392.96 | 0.925 | 3.33 | -- | -- | -- | -- | -- | -0.543 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 356.64 | temperature | 20 | 90 | < th | dose independent | rect. | 6 | 2 |
| 2 | 357.30 | temperature | 20 | 90 | < th | dose dependent | rect. | 6 | 1 |
| 16 | 359.72 | temperature | 20 | 90 | < th | dose independent | rect. | 6 | 10 |
| 24 | 360.34 | temperature | 20 | 90 | < th | dose dependent | rect. | 6 | 7 |
| 33 | 360.73 | temperature | 20 | 10 | < th | dose independent | rect. | 6 | 11 |
| 97 | 362.33 | humidity | 80 | 90 | < th | dose dependent | rect. | 6 | 1 |
| 100 | 362.41 | wind | 5 | 10 | > th | dose independent | rect. | 8 | 1 |
| 104 | 362.41 | wind | 5 | 10 | > th | dose dependent | rect. | 8 | 1 |
| 147 | 363.80 | humidity | 80 | 90 | < th | dose independent | rect. | 6 | 1 |
| 161 | 365.16 | wind | 3 | 90 | > th | dose dependent | rect. | 6 | 1 |
| 162 | 365.24 | radiation | 40 | 10 | > th | dose dependent | rect. | 14 | 1 |
| 200 | 365.98 | atmosphere | 1005 | 30 | < th | dose dependent | rect. | 21 | 18 |
| 206 | 366.18 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 12 | 1 |
| 209 | 366.40 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 12 | 1 |
| 210 | 366.46 | wind | 5 | 10 | > th | dose independent | rect. | 1 | 8 |
| 212 | 366.59 | wind | 1 | 10 | < th | dose independent | rect. | 13 | 1 |
| 214 | 366.59 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 21 | 17 |
| 215 | 366.59 | wind | 1 | 10 | < th | dose dependent | rect. | 13 | 1 |
| 221 | 366.80 | atmosphere | 1005 | 90 | < th | dose independent | rect. | 20 | 19 |
| 231 | 367.06 | wind | 5 | 10 | > th | dose independent | rect. | 3 | 6 |
| 232 | 367.07 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 12 | 2 |
| 272 | 367.97 | atmosphere | 1005 | 90 | < th | dose independent | rect. | 24 | 15 |
| 285 | 368.09 | atmosphere | 1005 | 90 | < th | dose independent | rect. | 24 | 22 |
| 297 | 368.33 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 24 | 15 |
| 299 | 368.35 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 24 | 14 |
| 309 | 368.44 | wind | 5 | 10 | > th | dose dependent | rect. | 1 | 8 |
| 323 | 368.63 | wind | 5 | 10 | > th | dose dependent | rect. | 3 | 6 |
| 335 | 368.77 | atmosphere | 1005 | 90 | < th | dose independent | rect. | 7 | 21 |
| 393 | 369.33 | atmosphere | 1005 | 90 | > th | dose independent | rect. | 8 | 23 |
| 401 | 369.43 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 24 | 23 |
| 423 | 369.62 | atmosphere | 1010 | 30 | < th | dose dependent | rect. | 7 | 21 |
| 470 | 369.98 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 3 | 11 |
| 482 | 370.04 | wind | 3 | 90 | > th | dose independent | rect. | 6 | 1 |
| 588 | 370.85 | atmosphere | 1005 | 720 | < th | dose independent | rect. | 1 | 1 |
| 593 | 370.87 | radiation | 40 | 10 | > th | dose independent | rect. | 14 | 1 |
| 635 | 370.88 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 4 | 11 |
| 682 | 371.07 | atmosphere | 1005 | 90 | < th | dose independent | no | NA | NA |
| 684 | 371.08 | atmosphere | 1005 | 270 | < th | dose independent | sin | 6 | NA |
| 783 | 371.53 | atmosphere | 1005 | 270 | > th | dose independent | sin | 6 | NA |
| 820 | 371.65 | atmosphere | 1005 | 10 | < th | dose dependent | no | NA | NA |
| 827 | 371.68 | wind | 1 | 90 | < th | dose dependent | rect. | 15 | 6 |
| 831 | 371.69 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 832 | 371.69 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 869 | 371.79 | atmosphere | 1010 | 10 | < th | dose dependent | rect. | 1 | 11 |
| 870 | 371.81 | atmosphere | 1005 | 90 | < th | dose independent | rect. | 13 | 23 |
| 916 | 371.93 | atmosphere | 1005 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 933 | 371.99 | atmosphere | 1005 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 947 | 372.03 | atmosphere | 1005 | 30 | < th | dose dependent | sin | 5 | NA |
| 967 | 372.11 | humidity | 50 | 720 | > th | dose dependent | rect. | 22 | 4 |
| 986 | 372.18 | wind | 3 | 90 | > th | dose dependent | rect. | 2 | 6 |