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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0479400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Phenylalanyl-tRNA synthetase, class IIc family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.08 (0.0339) R2 : 0.000662
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0392 (0.0713) R2dN8 : 0.000855 R2N8 : 0.000662
σ : 0.638
deviance : 186.77
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
169.47 0.612 3.08 -0.46 0.287 0.49 -1.88 -1.87 -0.0741 11 19.05 15 -- --
173.63 0.614 3.08 -0.466 0.264 0.454 -0.053 -- -0.0645 11.1 17.76 18 -- --
172.83 0.612 3.08 -0.514 0.229 0.427 -- -0.399 -0.0947 10.6 18.8 15 -- --
173.6 0.614 3.08 -0.484 0.282 0.464 -- -- -0.074 11 17.2 18 -- --
174.02 0.614 3.09 -0.491 -- 0.276 -- -0.414 -0.0834 -- 23.72 18 -- --
177.17 0.624 3.09 -0.497 0.233 -- -0.0503 -- -0.0983 1.32 -- -- -- --
177.18 0.623 3.09 -0.496 0.233 -- -- -- -0.098 1.27 -- -- -- --
174.75 0.616 3.09 -0.492 -- 0.261 -- -- -0.0852 -- 19.07 18 -- --
179.75 0.624 3.07 -- 0.302 0.482 -- -- -0.0204 11.1 17.72 17 -- --
180.53 0.628 3.09 -0.487 -- -- -- -- -0.0932 -- -- -- -- --
183.66 0.634 3.08 -- 0.224 -- -- -- -0.0428 1.18 -- -- -- --
181.01 0.627 3.08 -- -- 0.255 -- -- -0.0288 -- 19.67 15 -- --
186.77 0.638 3.08 -- -- -- -- -- -0.0392 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 165.41 humidity 90.0 10 < th dose independent rect. 3 3
3 166.38 radiation 10.0 30 > th dose independent rect. 14 22
4 166.47 atmosphere 1005.0 90 > th dose dependent rect. 3 2
6 166.60 radiation 20.0 10 < th dose dependent rect. 4 12
7 166.67 atmosphere 1005.0 90 > th dose independent rect. 3 2
9 166.87 atmosphere 1005.0 90 < th dose independent rect. 23 1
11 166.97 radiation 20.0 10 < th dose dependent rect. 20 20
21 167.24 humidity 90.0 720 < th dose independent rect. 14 3
24 167.33 wind 5.0 10 > th dose independent rect. 24 2
26 167.33 precipitation 0.1 90 > th dose independent rect. 23 2
29 167.33 wind 5.0 10 > th dose dependent rect. 24 2
31 167.33 precipitation 0.1 90 > th dose dependent rect. 23 2
38 167.43 radiation 10.0 30 > th dose independent rect. 16 20
43 167.45 wind 5.0 10 > th dose independent rect. 24 6
48 167.50 wind 1.0 720 > th dose independent rect. 17 6
59 167.56 wind 5.0 30 > th dose dependent rect. 24 6
74 167.73 temperature 10.0 720 > th dose dependent rect. 14 3
75 167.79 precipitation 0.1 720 > th dose independent rect. 22 1
77 167.79 precipitation 0.1 720 > th dose dependent rect. 22 1
85 167.84 atmosphere 995.0 30 > th dose dependent rect. 12 18
86 167.86 humidity 90.0 90 > th dose independent rect. 14 1
89 167.86 humidity 90.0 90 > th dose dependent rect. 14 1
103 168.18 radiation 20.0 10 < th dose dependent rect. 18 22
104 168.22 radiation 20.0 10 < th dose dependent rect. 20 18
106 168.23 wind 1.0 30 < th dose dependent rect. 13 3
115 168.29 radiation 10.0 30 > th dose independent rect. 6 6
141 168.44 wind 5.0 10 > th dose dependent rect. 22 4
146 168.50 wind 1.0 30 < th dose independent rect. 13 3
182 168.69 radiation 20.0 10 < th dose independent rect. 3 13
184 168.71 radiation 20.0 10 < th dose dependent rect. 7 23
188 168.73 radiation 20.0 10 < th dose dependent rect. 3 23
190 168.75 precipitation 0.1 720 < th dose independent rect. 17 21
192 168.75 precipitation 0.1 720 < th dose dependent rect. 17 21
197 168.79 wind 1.0 14400 < th dose dependent rect. 16 1
205 168.81 temperature 15.0 10 > th dose independent rect. 23 13
206 168.81 humidity 90.0 10 < th dose dependent rect. 4 1
225 168.83 atmosphere 1000.0 270 > th dose independent rect. 1 13
230 168.85 precipitation 0.1 270 < th dose independent rect. 1 13
231 168.85 precipitation 0.1 270 < th dose dependent rect. 1 13
234 168.88 wind 5.0 30 > th dose independent rect. 22 8
242 168.91 radiation 20.0 10 < th dose dependent rect. 9 7
244 168.92 humidity 90.0 14400 < th dose dependent rect. 21 6
246 168.93 radiation 1.0 720 > th dose independent rect. 15 2
251 168.95 atmosphere 1015.0 30 < th dose dependent rect. 23 2
259 168.97 humidity 50.0 14400 > th dose dependent rect. 21 7
278 169.04 humidity 50.0 14400 > th dose dependent rect. 23 2
293 169.05 radiation 1.0 10 > th dose dependent rect. 14 22
296 169.06 humidity 50.0 14400 > th dose dependent rect. 23 9
309 169.08 humidity 90.0 14400 < th dose dependent rect. 22 11
313 169.10 humidity 50.0 270 > th dose independent rect. 1 13
315 169.10 wind 1.0 30 < th dose dependent rect. 15 3
347 169.13 humidity 80.0 10 < th dose independent rect. 14 22
365 169.17 wind 1.0 30 < th dose independent rect. 15 1
370 169.17 wind 1.0 30 < th dose dependent rect. 15 1
397 169.20 wind 9.0 270 < th dose independent rect. 1 13
403 169.21 temperature 10.0 270 > th dose independent rect. 14 11
404 169.21 temperature 10.0 270 > th dose independent rect. 1 13
406 169.21 atmosphere 1015.0 270 < th dose independent rect. 1 13
415 169.23 humidity 90.0 14400 < th dose dependent rect. 23 1
440 169.27 humidity 80.0 14400 > th dose independent rect. 21 12
484 169.36 wind 1.0 1440 < th dose dependent rect. 19 1
488 169.37 temperature 15.0 720 > th dose independent rect. 14 3
490 169.37 wind 1.0 720 < th dose dependent rect. 15 2
497 169.40 atmosphere 1015.0 720 < th dose independent rect. 3 2
498 169.40 precipitation 0.1 720 < th dose independent rect. 17 6
502 169.40 precipitation 0.1 720 < th dose dependent rect. 17 6
528 169.45 wind 1.0 1440 < th dose independent rect. 19 1
535 169.46 precipitation 0.1 43200 > th dose independent rect. 1 3
552 169.49 wind 1.0 720 < th dose dependent rect. 16 5
554 169.50 humidity 90.0 4320 < th dose independent rect. 22 3
555 169.50 precipitation 0.1 43200 < th dose independent rect. 1 3
556 169.50 precipitation 0.1 43200 < th dose dependent rect. 1 3
561 169.52 precipitation 0.1 43200 > th dose independent rect. 1 1
564 169.52 precipitation 0.1 43200 > th dose dependent rect. 1 1
566 169.53 precipitation 0.1 43200 < th dose independent rect. 1 1
567 169.53 precipitation 0.1 270 < th dose independent rect. 14 11
568 169.53 precipitation 0.1 43200 < th dose dependent rect. 1 1
570 169.53 precipitation 0.1 270 < th dose dependent rect. 14 11
578 169.55 wind 9.0 4320 < th dose independent rect. 4 3
579 169.55 atmosphere 995.0 720 > th dose independent rect. 17 22
591 169.59 wind 3.0 90 < th dose independent rect. 4 1
611 169.63 temperature 20.0 90 > th dose independent rect. 23 1
620 169.64 wind 5.0 90 < th dose dependent rect. 4 1
631 169.65 humidity 80.0 14400 < th dose independent rect. 20 13
632 169.65 radiation 20.0 10 < th dose dependent sin 2 NA
633 169.65 precipitation 0.1 43200 > th dose dependent rect. 1 3
638 169.67 humidity 80.0 14400 > th dose independent rect. 6 2
640 169.67 wind 1.0 10 > th dose independent rect. 12 18
671 169.72 humidity 70.0 43200 > th dose dependent rect. 8 2
681 169.74 atmosphere 995.0 270 > th dose independent rect. 14 11
685 169.75 precipitation 0.1 720 < th dose independent rect. 3 2
687 169.75 atmosphere 995.0 720 > th dose independent rect. 17 6
691 169.75 precipitation 0.1 720 < th dose dependent rect. 3 2
700 169.76 atmosphere 1015.0 720 < th dose dependent rect. 15 2
702 169.77 wind 7.0 720 < th dose independent rect. 2 3
717 169.79 humidity 90.0 270 < th dose independent rect. 14 11
721 169.80 wind 1.0 14400 < th dose independent rect. 16 1
731 169.81 temperature 30.0 10 < th dose independent rect. 5 23
744 169.84 humidity 70.0 43200 > th dose dependent rect. 7 4
746 169.85 precipitation 0.1 43200 > th dose independent rect. 24 5
749 169.85 atmosphere 1000.0 30 > th dose independent rect. 12 18
753 169.86 humidity 80.0 14400 > th dose independent sin 10 NA
756 169.86 precipitation 0.1 720 < th dose independent rect. 14 3
760 169.86 precipitation 0.1 720 < th dose dependent rect. 14 3
770 169.87 precipitation 0.1 720 < th dose independent rect. 11 18
777 169.87 precipitation 0.1 720 < th dose dependent rect. 11 18
790 169.89 wind 1.0 270 < th dose independent rect. 19 1
793 169.89 radiation 1.0 14400 > th dose independent rect. 4 2
797 169.89 wind 1.0 720 < th dose independent rect. 16 5
805 169.89 wind 1.0 270 < th dose dependent rect. 19 1
814 169.91 wind 9.0 4320 < th dose independent rect. 5 1
824 169.92 wind 1.0 43200 < th dose independent rect. 17 6
825 169.92 humidity 80.0 14400 > th dose independent rect. 20 7
831 169.93 radiation 20.0 10 < th dose independent rect. 20 20
836 169.94 radiation 1.0 14400 < th dose independent rect. 24 6
848 169.95 radiation 10.0 720 < th dose dependent rect. 2 21
855 169.96 radiation 20.0 10 < th dose dependent rect. 9 5
856 169.97 radiation 1.0 14400 < th dose independent rect. 3 3
872 169.98 wind 9.0 4320 < th dose dependent rect. 13 13
875 169.98 humidity 50.0 30 > th dose dependent rect. 12 18
884 169.99 wind 1.0 4320 > th dose dependent rect. 13 13
886 170.00 humidity 80.0 14400 < th dose independent rect. 20 7
892 170.01 wind 9.0 270 < th dose independent rect. 14 11
894 170.01 temperature 30.0 270 < th dose independent rect. 1 13
895 170.01 wind 1.0 43200 < th dose dependent rect. 17 6
902 170.02 humidity 80.0 43200 < th dose independent rect. 8 3
903 170.02 atmosphere 1000.0 720 > th dose independent rect. 2 3
905 170.02 humidity 80.0 30 > th dose independent rect. 3 20
908 170.03 wind 9.0 4320 > th dose independent rect. 3 1
941 170.03 radiation 20.0 10 < th dose independent rect. 18 22
942 170.03 wind 9.0 4320 > th dose dependent rect. 3 1
950 170.03 wind 1.0 720 < th dose dependent rect. 17 1
976 170.04 wind 1.0 720 < th dose independent rect. 17 1
989 170.05 radiation 10.0 720 < th dose dependent rect. 2 19
998 170.07 humidity 80.0 43200 > th dose independent rect. 7 4
999 170.07 wind 1.0 43200 > th dose independent rect. 17 6