BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0479400 Os09g0479400|AK109596
(575 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G55790.1 | chr1:20852685-20856069 REVERSE LENGTH=516 237 2e-62
AT5G56060.1 | chr5:22704008-22704892 FORWARD LENGTH=221 177 1e-44
AT1G55800.1 | chr1:20856922-20858235 REVERSE LENGTH=315 159 3e-39
AT5G56075.1 | chr5:22709756-22710809 FORWARD LENGTH=257 147 1e-35
AT5G25030.1 | chr5:8620083-8620991 REVERSE LENGTH=194 144 9e-35
AT4G26485.1 | chr4:13377685-13378390 REVERSE LENGTH=172 137 2e-32
>AT1G55790.1 | chr1:20852685-20856069 REVERSE LENGTH=516
Length = 515
Score = 237 bits (604), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 111/197 (56%), Positives = 137/197 (69%)
Query: 188 WLKHYSSLQSILTVGDGDFSFSLALATAFGSGDNLVATSLDTIEDLRGKYSKAESNIMEL 247
W+KHYSS IL VG+GDFSFS +LAT FGS N+ A+SLD+ + + KY KA SN+ L
Sbjct: 20 WVKHYSSNHQILLVGEGDFSFSHSLATLFGSASNICASSLDSYDVVVRKYKKARSNLKTL 79
Query: 248 KRMGATVLHGIDAKRMKDHTNLKLRRFDRIIFNFPHAGFKGKEDDLHMINLHRELVWGFF 307
KR+GA +LHG+DA + H +L+ RRFDR+IFNFPHAGF G+E D +I HRELV+GFF
Sbjct: 80 KRLGALLLHGVDATTLHFHPDLRYRRFDRVIFNFPHAGFHGRESDSSLIRKHRELVFGFF 139
Query: 308 QNARHLLRPYGEIHVSHKIGLPYDRWCIEHLAYESSLTMIAKVDFRKEDYPGYNQKRGDS 367
A LLR GE+HVSHK P+ W +E LA L +I +V F K +YPGY KRGD
Sbjct: 140 NGASRLLRANGEVHVSHKNKAPFSEWNLEELASRCFLVLIQRVAFEKNNYPGYENKRGDG 199
Query: 368 AKCDQPFELGACCTFMF 384
+CDQPF LG C TF F
Sbjct: 200 RRCDQPFLLGECSTFKF 216
>AT5G56060.1 | chr5:22704008-22704892 FORWARD LENGTH=221
Length = 220
Score = 177 bits (449), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 91/190 (47%), Positives = 128/190 (67%), Gaps = 4/190 (2%)
Query: 189 LKHYSSLQSILTVGDGDFSFSLALATAFGSGDNLVATSLDTIEDLRGKYSKAESNIMELK 248
L+ YS+ Q IL VG+GDFSFSL+LA FGS N+ ATSLDT E+L KY+ ++N+ L+
Sbjct: 9 LQQYSNKQKILLVGEGDFSFSLSLARVFGSATNITATSLDTREELGIKYTDGKANVEGLE 68
Query: 249 RMGATVLHGIDAKRMKDHTNLKLRRFDRIIFNFPHAGFK-GKEDDLHMINLHRELVWGFF 307
G TV+HG++ M ++ +L R+DRIIFNFPH+G G E D+ I LH+ LV GF
Sbjct: 69 LFGCTVVHGVNVHSMS--SDYRLGRYDRIIFNFPHSGLGFGSEHDIFFIMLHQGLVRGFL 126
Query: 308 QNARHLLRPY-GEIHVSHKIGLPYDRWCIEHLAYESSLTMIAKVDFRKEDYPGYNQKRGD 366
++AR +L+ GEIHV+HK P++RW IE LA E L +I +++F K +PGY+ K+G
Sbjct: 127 ESARKMLKDEDGEIHVTHKTTDPFNRWGIETLAGEKGLRLIGEIEFHKWAFPGYSNKKGG 186
Query: 367 SAKCDQPFEL 376
+ C+ F L
Sbjct: 187 GSNCNSTFLL 196
>AT1G55800.1 | chr1:20856922-20858235 REVERSE LENGTH=315
Length = 314
Score = 159 bits (403), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 92/228 (40%), Positives = 113/228 (49%), Gaps = 60/228 (26%)
Query: 188 WLKHYSSLQSILTVGDGDFSFSLALATAFGSGDNLVATSLDTI----------------- 230
W+KHYSS IL VG+GDFSFS +LAT FGS N+ A+SLD+
Sbjct: 18 WVKHYSSKHQILLVGEGDFSFSCSLATCFGSASNIYASSLDSYDYKPVNKGCSFKLDFLS 77
Query: 231 ----------EDLRGKYSKAESNIMELKRMGATVLHGIDAKRMKDHTNLKLRRFDRIIFN 280
+D+ KY A SN+ LKR+GA +LHG+DA + H +L+ RRFDR+IFN
Sbjct: 78 CCMSFMVIKPDDVVRKYKNARSNLETLKRLGAFLLHGVDATTLHFHPDLRYRRFDRVIFN 137
Query: 281 FPHAGFKGKEDDLHMIN----LHRELVWGFFQNARHLLRPYGEIHVSHKIGLPYDRWCIE 336
FPH GF KE D I R L F A H+LR GE+
Sbjct: 138 FPHTGFHRKESDPCQIQPAAATLRNLFKDFLHGASHMLRADGELEA-------------- 183
Query: 337 HLAYESSLTMIAKVDFRKEDYPGYNQKRGDSAKCDQPFELGACCTFMF 384
F K +YPGY KRGD ++CDQPF LG C TF F
Sbjct: 184 ---------------FEKRNYPGYENKRGDGSRCDQPFLLGECSTFKF 216
>AT5G56075.1 | chr5:22709756-22710809 FORWARD LENGTH=257
Length = 256
Score = 147 bits (372), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 83/207 (40%), Positives = 117/207 (56%), Gaps = 20/207 (9%)
Query: 186 VKWLKHYSSLQSILTVGDGDFSFSLALATAFGSGDNLVATSLDTIEDLRGKYSKAESNIM 245
K L+HY++ Q IL VG+GDFSFSL+LA AFGS NL ATSLDT +L K+ ++N+
Sbjct: 64 TKRLRHYTNKQKILLVGEGDFSFSLSLARAFGSASNLTATSLDTQGELEQKFKNGKANVE 123
Query: 246 ELKRMGATVLHGIDAKRMKDHTNLKLRR-FDRIIFNFPHAGFKGKEDDLHMINLHRELVW 304
EL+R+G +V++G++ M ++ +DR+IFNFP ELV
Sbjct: 124 ELERLGCSVVYGVNVHSMITKPSVGGSAIYDRVIFNFP----------------THELVR 167
Query: 305 GFFQNARHLLRPY---GEIHVSHKIGLPYDRWCIEHLAYESSLTMIAKVDFRKEDYPGYN 361
GF ++AR L++ GEIHV HK P+ W ++ L + L +I +V+F YPGY
Sbjct: 168 GFMKSARVLVKDEDKGGEIHVIHKTEYPFSEWKLKTLGEKEGLDLIREVEFCLSHYPGYF 227
Query: 362 QKRGDSAKCDQPFELGACCTFMFMRDL 388
KRG D F +G TFMF +
Sbjct: 228 NKRGSGGYSDSSFPVGKSSTFMFTKQF 254
>AT5G25030.1 | chr5:8620083-8620991 REVERSE LENGTH=194
Length = 193
Score = 144 bits (364), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 78/201 (38%), Positives = 120/201 (59%), Gaps = 15/201 (7%)
Query: 187 KWLKHYSSLQSILTVGDGDFSFSLALATAFGSGDNLVATSLDTIEDLRGKYSKAESNIME 246
K L YS+ Q IL VG+G+FSFSL+LA A GS N+ A SLD EDL Y+ + N+ E
Sbjct: 7 KRLSRYSNEQKILVVGEGEFSFSLSLAKALGSATNITAISLDIREDLGRNYNNGKGNVEE 66
Query: 247 LKRMGATVLHGIDAKRMKDHTNLKLRRFDRIIFNFPHAGFKGKEDDLHMINLHRELVWGF 306
L+R+G TV+ G++ MK ++ +L +D IIFNFPHAG + K + GF
Sbjct: 67 LERLGCTVVRGVNVHSMK--SDDRLAHYDIIIFNFPHAGKRNK------------VFGGF 112
Query: 307 FQNARHLLRPY-GEIHVSHKIGLPYDRWCIEHLAYESSLTMIAKVDFRKEDYPGYNQKRG 365
++AR +++ GEIH++ P+++W ++ LA ES L +I ++ F K +P + KR
Sbjct: 113 MESAREMMKDEDGEIHITLNTLNPFNKWDLKALAEESGLRLIQRMQFIKWAFPSSSNKRE 172
Query: 366 DSAKCDQPFELGACCTFMFMR 386
+ CD + +G+ T+MF +
Sbjct: 173 SGSNCDFIYPIGSAITYMFKK 193
>AT4G26485.1 | chr4:13377685-13378390 REVERSE LENGTH=172
Length = 171
Score = 137 bits (345), Expect = 2e-32, Method: Composition-based stats.
Identities = 72/169 (42%), Positives = 97/169 (57%), Gaps = 3/169 (1%)
Query: 221 NLVATSLDTIEDLRGKYSKAESNIMELKRMGATVLHGIDAKRMKDHTNLKLRRFDRIIFN 280
N+ ATSLD+ ++L KY A NI LKR G + H +D M +L L+R+DRI+FN
Sbjct: 2 NITATSLDSEDELSIKYMDAVDNINILKRYGCDIQHEVDVHTMSFDNSLSLQRYDRIVFN 61
Query: 281 FPHAG--FKGKEDDLHMINLHRELVWGFFQNARHLLRPYGEIHVSHKIGLPYDRWCIEHL 338
FPHAG F G+E I H+ELV GF +NA+ +L GEIH++HK P+ W I+ L
Sbjct: 62 FPHAGSRFFGRELSSRAIESHKELVRGFLENAKEMLEEDGEIHITHKTTYPFSDWGIKKL 121
Query: 339 AYESSLTMIAKVDFRKEDYPGYNQKRGDSA-KCDQPFELGACCTFMFMR 386
L ++ K F YPGY KRG + D F +G C T+MF +
Sbjct: 122 GKGEGLKLLKKSKFELSHYPGYITKRGSGGRRSDDYFPVGECSTYMFTQ 170
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.137 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,723,180
Number of extensions: 455550
Number of successful extensions: 1113
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 1102
Number of HSP's successfully gapped: 6
Length of query: 575
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 471
Effective length of database: 8,255,305
Effective search space: 3888248655
Effective search space used: 3888248655
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)