BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0474000 Os09g0474000|AK108319
(173 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0474000 Eukaryotic transcription factor, DNA-binding d... 310 5e-85
Os08g0487100 Similar to BZIP transcription factor BZI-2 97 6e-21
Os02g0728001 91 4e-19
>Os09g0474000 Eukaryotic transcription factor, DNA-binding domain containing
protein
Length = 173
Score = 310 bits (793), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 152/173 (87%), Positives = 152/173 (87%)
Query: 1 MLHHHYHGEVASLHCLSPPSLPFSSHYHSNMITMAPSPFHFPAATCEPIQELLPVVAGNR 60
MLHHHYHGEVASLHCLSPPSLPFSSHYHSNMITMAPSPFHFPAATCEPIQELLPVVAGNR
Sbjct: 1 MLHHHYHGEVASLHCLSPPSLPFSSHYHSNMITMAPSPFHFPAATCEPIQELLPVVAGNR 60
Query: 61 PAGSGSTDDAYQXXXXXXXXXXXXXXXXXXXXXSRMRKQRQLSELRGQVVHLRDANRRLL 120
PAGSGSTDDAYQ SRMRKQRQLSELRGQVVHLRDANRRLL
Sbjct: 61 PAGSGSTDDAYQMAAEEERRRRRMISNRESARRSRMRKQRQLSELRGQVVHLRDANRRLL 120
Query: 121 DELNQAMRGCSDVHCENARLRKERAELQTKLEHLMQAQKNNTSPSSSQPCENI 173
DELNQAMRGCSDVHCENARLRKERAELQTKLEHLMQAQKNNTSPSSSQPCENI
Sbjct: 121 DELNQAMRGCSDVHCENARLRKERAELQTKLEHLMQAQKNNTSPSSSQPCENI 173
>Os08g0487100 Similar to BZIP transcription factor BZI-2
Length = 230
Score = 97.1 bits (240), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 52/86 (60%), Positives = 63/86 (73%), Gaps = 7/86 (8%)
Query: 94 SRMRKQRQLSELRGQVVHLRDANRRLLDELNQAMRGCSDVHCENARLRKERAELQTKLEH 153
SRMRKQRQLSEL QV HLR ANRRLLDELN+A+RGC+DV EN+RLR E+AEL KL+
Sbjct: 137 SRMRKQRQLSELWAQVEHLRGANRRLLDELNRALRGCADVRRENSRLRDEKAELAGKLQL 196
Query: 154 LMQAQ-------KNNTSPSSSQPCEN 172
L+ Q ++ S SS+PC+N
Sbjct: 197 LLPRQPAPEKNAADDQSSCSSEPCKN 222
>Os02g0728001
Length = 169
Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 82/156 (52%), Gaps = 13/156 (8%)
Query: 6 YHGEVASLHCLSPPS-LPFSSHYH--SNMITMAPSPFHFPAATCE------PIQELLPVV 56
Y E+AS LSP S + F +HYH +N + + P AT P + LPV
Sbjct: 2 YPAEIASFPYLSPASAVSFKTHYHVDTNDFLLQYNSLLVPQATSYQHVAHLPHETNLPV- 60
Query: 57 AGNRPAGSGSTDDAYQXXXXXXXXXXXXXXXXXXXXXSRMRKQRQLSELRGQVVHLRDAN 116
GN+ + S +DD YQ SRMRKQ+QLSEL QVVHLR N
Sbjct: 61 -GNK-SNSDESDD-YQRSLAEERRRRRMISNRESARRSRMRKQKQLSELWAQVVHLRSTN 117
Query: 117 RRLLDELNQAMRGCSDVHCENARLRKERAELQTKLE 152
R+LLD+LN +R C V EN +LR E+A+LQ +LE
Sbjct: 118 RQLLDQLNHVIRDCDRVTHENCQLRDEQAKLQKQLE 153
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.129 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,745,082
Number of extensions: 214439
Number of successful extensions: 915
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 914
Number of HSP's successfully gapped: 3
Length of query: 173
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 79
Effective length of database: 12,127,685
Effective search space: 958087115
Effective search space used: 958087115
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 152 (63.2 bits)