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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0474000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Eukaryotic transcription factor, DNA-binding domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.42 (0.0568) R2 : 0.763
β1 : -3.19 (0.223) R2dD : 0.133 R2D : 0.0918
β2 : 4.74 (0.141) R2dC : 0.592 R2C : 0.597
β3 : 1.19 (0.201) R2dE : 0.0201 R2E : 0.0313
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 5.83 (0.659) R2dD*E : 0.0501 R2D*E : -0.0176
γ1 : 0.307 (0.125) R2dN8 : 0.00415 R2N8 : 0.0119
σ : 1.03
deviance : 487.67
__
_____
C
peak time of C : 7.58
E
wheather : humidity
threshold : 66.32
memory length : 1481
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 10.3
open length of G : 2

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
488.47 1.04 6.41 -3.19 4.76 1.18 0.561 5.97 0.3 7.6 66.99 1473 10.1 2.15
525.41 1.07 6.3 -2.56 4.64 2.04 0.963 -- 0.607 7.49 69 1793 9.13 1.12
487.67 1.03 6.42 -3.19 4.74 1.19 -- 5.83 0.307 7.58 66.32 1481 10.3 2
522.47 1.06 6.29 -2.44 4.62 2.4 -- -- 0.589 7.37 68.56 1793 9.22 1.05
1641.69 1.89 6.56 -2.39 -- 2.72 -- 3.57 0.499 -- 57.03 1564 10.9 0.1
608.75 1.16 6.35 -2.67 4.79 -- 0.69 -- 0.333 7.7 -- -- -- --
610.09 1.16 6.35 -2.66 4.79 -- -- -- 0.331 7.69 -- -- -- --
1592.12 1.86 6.32 -1.84 -- 3.38 -- -- 0.829 -- 6.246 3103 9.15 1.05
664.36 1.2 6.3 -- 4.57 2.87 -- -- 0.595 7.21 66.45 1836 8.85 0.718
1844.69 2.01 6.47 -2.59 -- -- -- -- 0.402 -- -- -- -- --
796.32 1.32 6.28 -- 4.77 -- -- -- 0.627 7.72 -- -- -- --
823.17 1.34 6.41 -- -- 5.57 -- -- 0.845 -- -54.25 3144 0.383 11.3
2022.32 2.1 6.4 -- -- -- -- -- 0.689 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 470.35 temperature 20 14400 > th dose dependent rect. 14 1
6 471.95 wind 9 43200 < th dose dependent rect. 4 2
13 473.05 wind 1 43200 > th dose dependent rect. 4 2
181 479.12 temperature 20 14400 > th dose dependent sin 23 NA
185 479.18 wind 1 43200 > th dose independent rect. 5 1
236 480.24 temperature 30 14400 < th dose dependent rect. 14 1
288 481.24 temperature 30 14400 < th dose dependent rect. 8 8
301 481.40 wind 1 43200 > th dose dependent rect. 23 7
338 481.92 temperature 30 14400 < th dose dependent rect. 8 3
346 482.03 temperature 25 14400 > th dose independent rect. 23 18
351 482.05 wind 1 43200 > th dose dependent rect. 1 5
400 482.42 wind 9 43200 < th dose dependent rect. 1 5
422 482.68 wind 9 43200 < th dose dependent rect. 23 7
439 482.82 temperature 25 14400 < th dose independent rect. 24 18
647 484.67 temperature 25 14400 > th dose independent rect. 10 18
697 485.02 temperature 30 14400 < th dose dependent sin 23 NA
699 485.04 temperature 25 14400 > th dose independent rect. 15 3
705 485.07 temperature 25 14400 > th dose independent rect. 11 10
728 485.23 temperature 25 14400 > th dose independent rect. 14 5
735 485.25 temperature 25 14400 > th dose independent rect. 13 7
756 485.37 temperature 25 14400 > th dose independent sin 3 NA
758 485.38 temperature 25 14400 > th dose independent rect. 5 13
834 485.84 temperature 25 14400 < th dose independent rect. 16 2
837 485.85 temperature 25 14400 < th dose independent sin 3 NA
918 486.24 temperature 25 14400 > th dose independent sin 20 NA
944 486.33 temperature 25 14400 < th dose independent rect. 10 18
973 486.49 temperature 25 14400 < th dose independent rect. 11 10