BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0465500 Os09g0465500|AK109671
         (257 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0465500  Conserved hypothetical protein                      363   e-101
Os02g0781700  Conserved hypothetical protein                      202   2e-52

>Os09g0465500 Conserved hypothetical protein
          Length = 257

 Score =  363 bits (933), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 184/238 (77%), Positives = 184/238 (77%)

Query: 20  TMRLRREALESVXXXXXXXXXXXXXCGELGVPLPDPEGAVXXXXXXXXXXXXXXXXXXXX 79
           TMRLRREALESV             CGELGVPLPDPEGAV                    
Sbjct: 20  TMRLRREALESVLEELRRALDELRECGELGVPLPDPEGAVNDGGGGEEQPDNEEEGGGGG 79

Query: 80  XXXXXXXXXXXXXXXXXXXXXTDKLCDLLKSTFESPNFFQKVDEIQKSLYQNDAVEQDPS 139
                                TDKLCDLLKSTFESPNFFQKVDEIQKSLYQNDAVEQDPS
Sbjct: 80  GSGGGNDDDSAASLAGGSDGETDKLCDLLKSTFESPNFFQKVDEIQKSLYQNDAVEQDPS 139

Query: 140 WDIVKAVDLWEDDDLGDGYVLVKNDDATEGMAFFIATYISSLKTANECSPDQIRKALKKT 199
           WDIVKAVDLWEDDDLGDGYVLVKNDDATEGMAFFIATYISSLKTANECSPDQIRKALKKT
Sbjct: 140 WDIVKAVDLWEDDDLGDGYVLVKNDDATEGMAFFIATYISSLKTANECSPDQIRKALKKT 199

Query: 200 FSSRKRKGKLRKAWNGTKVIYNVDSWSATAIGIYHNQAILKVATTAFRTSCSVISKFL 257
           FSSRKRKGKLRKAWNGTKVIYNVDSWSATAIGIYHNQAILKVATTAFRTSCSVISKFL
Sbjct: 200 FSSRKRKGKLRKAWNGTKVIYNVDSWSATAIGIYHNQAILKVATTAFRTSCSVISKFL 257



>Os02g0781700 Conserved hypothetical protein
          Length = 265

 Score =  202 bits (514), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 98/165 (59%), Positives = 124/165 (75%), Gaps = 8/165 (4%)

Query: 101 TDKLCDLLKSTFESPNFFQKVDEIQKSLYQNDAVEQDPSWDIVKAVDLWED--------D 152
           TD+LCDLLKS   SP F +K+D IQKS+YQN AV++  SWDI+ A D+W+D        D
Sbjct: 101 TDELCDLLKSRVASPEFLEKLDNIQKSVYQNGAVDETISWDIISAADIWDDIDKGMNISD 160

Query: 153 DLGDGYVLVKNDDATEGMAFFIATYISSLKTANECSPDQIRKALKKTFSSRKRKGKLRKA 212
           D  DGYVL+K +D  +G+A F+A Y+ SLK   + +P+Q+++AL KTFS++KRK KL+KA
Sbjct: 161 DSEDGYVLIKQEDIVDGIASFMAAYLLSLKQTKDLTPNQLQQALSKTFSAKKRKSKLQKA 220

Query: 213 WNGTKVIYNVDSWSATAIGIYHNQAILKVATTAFRTSCSVISKFL 257
           W+GTKVIYN+ SWSATAIGIY N AILK AT AF TSC V SKFL
Sbjct: 221 WDGTKVIYNIASWSATAIGIYQNPAILKAATAAFWTSCRVASKFL 265



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.132    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,108,016
Number of extensions: 207549
Number of successful extensions: 518
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 517
Number of HSP's successfully gapped: 3
Length of query: 257
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 158
Effective length of database: 11,866,615
Effective search space: 1874925170
Effective search space used: 1874925170
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 155 (64.3 bits)