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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0465500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.04 (0.0444) R2 : 0.683
β1 : -0.786 (0.163) R2dD : 0.0169 R2D : -0.000807
β2 : -- (--) R2dC : -- R2C : --
β3 : -3.03 (0.0976) R2dE : 0.675 R2E : 0.663
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.25 (0.0949) R2dN8 : 0.00661 R2N8 : 0.00377
σ : 0.831
deviance : 318.43
__
_____
C
peak time of C : --
E
wheather : humidity
threshold : 50.37
memory length : 244
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 10.3
open length of G : 15.2

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
305.7 0.821 5.03 -0.724 1.08 -2.48 -0.175 -0.558 -0.335 9.62 50.52 268 9 16.4
305.87 0.815 5.03 -0.768 1.22 -2.36 0.344 -- -0.326 9.12 51 271 8.93 16.5
305.64 0.814 5.03 -0.735 1.15 -2.42 -- -0.423 -0.34 9.51 50.57 260 8.98 16.5
306.23 0.815 5.02 -0.756 1.26 -2.32 -- -- -0.326 9.11 51.27 267 8.95 16.6
319.89 0.833 4.99 -0.749 -- -3.01 -- -0.0779 -0.131 -- 50.13 245 10.4 15.1
425.85 0.967 4.97 -0.521 3.21 -- -0.118 -- -0.312 8.15 -- -- -- --
425.89 0.966 4.97 -0.524 3.21 -- -- -- -0.312 8.15 -- -- -- --
318.43 0.831 5.04 -0.786 -- -3.03 -- -- -0.25 -- 50.37 244 10.3 15.2
321.06 0.835 5 -- 1.37 -2.22 -- -- -0.244 9.03 51.47 267 8.89 16.7
994.46 1.47 5.05 -0.498 -- -- -- -- -0.274 -- -- -- -- --
433.14 0.974 4.95 -- 3.21 -- -- -- -0.254 8.17 -- -- -- --
334.26 0.852 5.04 -- -- -3 -- -- -0.209 -- 49.85 239 10.4 15.2
1001.01 1.48 5.04 -- -- -- -- -- -0.219 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 307.99 humidity 50.0 270 > th dose independent rect. 9 16
4 314.36 humidity 50.0 270 > th dose independent rect. 6 21
13 322.26 radiation 1.0 270 < th dose dependent rect. 17 10
14 323.15 radiation 1.0 270 < th dose independent rect. 17 10
19 326.08 temperature 30.0 270 < th dose independent rect. 18 9
20 326.27 precipitation 0.1 270 < th dose independent rect. 3 16
21 326.27 precipitation 0.1 270 < th dose dependent rect. 3 16
22 326.52 radiation 1.0 270 > th dose independent rect. 15 15
25 326.68 radiation 1.0 270 < th dose dependent rect. 5 22
29 327.08 humidity 70.0 270 > th dose independent rect. 18 9
30 327.38 humidity 50.0 270 > th dose independent rect. 7 8
43 330.08 humidity 50.0 270 > th dose independent rect. 18 23
47 331.49 precipitation 0.1 270 < th dose independent rect. 15 16
48 331.49 precipitation 0.1 270 < th dose dependent rect. 15 16
52 331.78 temperature 10.0 270 > th dose dependent rect. 14 6
55 331.94 radiation 1.0 270 < th dose dependent sin 14 NA
66 332.69 radiation 1.0 270 < th dose independent rect. 5 22
69 333.11 radiation 1.0 270 > th dose independent sin 14 NA
75 333.53 radiation 1.0 270 < th dose independent sin 13 NA
79 333.78 humidity 50.0 270 > th dose dependent rect. 18 9
88 334.44 temperature 10.0 270 > th dose independent rect. 19 8
91 334.44 atmosphere 995.0 270 > th dose independent rect. 19 8
97 334.44 temperature 10.0 270 > th dose independent rect. 3 16
98 334.44 atmosphere 1015.0 270 < th dose independent rect. 3 16
106 334.72 wind 9.0 270 < th dose independent rect. 19 8
107 334.76 wind 9.0 270 < th dose independent rect. 3 16
135 336.47 humidity 50.0 270 > th dose independent rect. 19 19
138 336.54 radiation 40.0 90 < th dose independent rect. 4 17
139 336.55 temperature 15.0 270 > th dose independent rect. 7 7
142 336.72 temperature 15.0 270 > th dose dependent rect. 15 3
143 336.76 humidity 50.0 270 > th dose independent rect. 21 16
155 337.83 precipitation 0.1 270 < th dose independent rect. 19 8
156 337.83 precipitation 0.1 270 < th dose dependent rect. 19 8
165 338.29 radiation 40.0 270 < th dose independent rect. 15 16
169 338.49 wind 9.0 270 < th dose independent rect. 14 17
171 338.57 atmosphere 995.0 270 > th dose independent rect. 7 7
172 338.57 atmosphere 1015.0 270 < th dose independent rect. 7 7
173 338.57 temperature 10.0 270 > th dose independent rect. 14 17
186 339.19 precipitation 0.1 270 < th dose independent rect. 7 7
187 339.19 precipitation 0.1 270 < th dose dependent rect. 7 7
195 339.51 wind 9.0 270 < th dose independent rect. 7 7
196 339.56 wind 1.0 270 > th dose independent rect. 13 8
222 340.43 precipitation 0.1 270 < th dose independent rect. 13 8
223 340.43 precipitation 0.1 270 < th dose dependent rect. 13 8
224 340.44 humidity 50.0 270 > th dose dependent rect. 9 17
234 340.65 precipitation 0.1 270 < th dose independent rect. 1 8
235 340.65 precipitation 0.1 270 < th dose dependent rect. 1 8
241 340.83 radiation 1.0 270 > th dose dependent rect. 17 13
256 341.49 wind 1.0 270 > th dose independent rect. 7 7
258 341.56 radiation 30.0 270 < th dose independent rect. 1 8
266 341.96 humidity 90.0 90 < th dose dependent rect. 15 17
269 342.09 temperature 10.0 10 > th dose dependent rect. 16 17
272 342.17 radiation 1.0 270 > th dose independent rect. 7 7
274 342.18 temperature 10.0 270 > th dose dependent rect. 14 17
288 342.48 radiation 1.0 30 > th dose independent rect. 17 16
297 342.74 wind 7.0 270 < th dose independent rect. 1 8
313 343.01 humidity 90.0 270 < th dose dependent rect. 14 6
327 343.46 radiation 1.0 270 > th dose independent rect. 15 4
341 343.59 temperature 30.0 270 < th dose independent rect. 1 8
348 343.72 temperature 30.0 270 < th dose independent rect. 9 17
415 344.18 wind 9.0 270 < th dose dependent rect. 2 7
425 344.25 humidity 90.0 270 < th dose dependent rect. 15 3
442 344.57 radiation 40.0 90 < th dose independent rect. 3 8
450 344.60 wind 1.0 270 > th dose independent rect. 14 5
452 344.74 radiation 30.0 10 < th dose independent rect. 4 17
459 344.91 temperature 10.0 270 > th dose independent rect. 1 8
461 344.91 humidity 50.0 270 > th dose independent rect. 1 8
462 344.91 atmosphere 995.0 270 > th dose independent rect. 1 8
463 344.91 atmosphere 1015.0 270 < th dose independent rect. 1 8
464 344.91 temperature 10.0 270 > th dose independent rect. 9 16
492 345.39 temperature 10.0 270 > th dose independent rect. 13 8
493 345.39 temperature 10.0 270 > th dose independent rect. 21 16
494 345.39 atmosphere 995.0 270 > th dose independent rect. 21 16
501 345.59 wind 5.0 270 < th dose independent rect. 2 6
512 345.79 atmosphere 1015.0 270 < th dose independent rect. 19 8
519 345.89 wind 9.0 270 < th dose independent rect. 13 8
536 346.17 atmosphere 995.0 270 > th dose independent rect. 3 16
551 346.24 temperature 10.0 10 > th dose dependent rect. 15 7
552 346.27 temperature 10.0 270 > th dose independent rect. 14 5
554 346.27 atmosphere 1010.0 270 < th dose independent rect. 14 5
556 346.27 temperature 10.0 270 > th dose independent rect. 19 19
557 346.27 atmosphere 995.0 270 > th dose independent rect. 19 19
564 346.36 radiation 1.0 270 > th dose dependent rect. 16 15
567 346.40 radiation 30.0 90 < th dose independent rect. 15 6
569 346.43 temperature 15.0 10 > th dose dependent rect. 16 5
573 346.45 radiation 1.0 30 < th dose independent rect. 21 17
579 346.51 wind 9.0 270 < th dose independent rect. 14 5
582 346.53 wind 9.0 270 < th dose independent rect. 21 16
587 346.64 precipitation 0.1 270 < th dose independent rect. 13 20
588 346.64 precipitation 0.1 270 < th dose dependent rect. 13 20
602 346.84 humidity 90.0 10 < th dose dependent rect. 16 17
615 347.07 wind 9.0 270 < th dose independent rect. 9 16
616 347.07 atmosphere 995.0 270 > th dose independent rect. 14 17
632 347.22 radiation 40.0 270 < th dose dependent rect. 2 7
636 347.29 wind 9.0 270 < th dose independent rect. 19 19
639 347.32 radiation 1.0 30 < th dose independent rect. 21 15
641 347.33 radiation 1.0 30 < th dose dependent rect. 21 17
649 347.40 radiation 30.0 90 < th dose independent rect. 15 20
654 347.41 radiation 1.0 30 < th dose independent rect. 21 11
698 347.80 precipitation 0.1 270 < th dose independent rect. 15 3
699 347.80 precipitation 0.1 270 < th dose dependent rect. 15 3
711 347.95 humidity 90.0 270 < th dose independent rect. 14 5
719 348.04 wind 7.0 10 < th dose independent rect. 16 17
722 348.07 wind 9.0 90 < th dose dependent rect. 20 8
726 348.14 precipitation 0.1 10 < th dose independent rect. 16 17
727 348.14 precipitation 0.1 10 < th dose dependent rect. 16 17
733 348.16 temperature 10.0 90 > th dose dependent rect. 4 17
736 348.20 radiation 1.0 30 < th dose dependent rect. 21 15
745 348.29 radiation 1.0 30 < th dose dependent rect. 21 11
788 348.77 humidity 90.0 270 < th dose independent rect. 15 3
835 349.38 temperature 25.0 90 > th dose dependent rect. 16 16
840 349.42 radiation 40.0 10 < th dose dependent rect. 5 16
841 349.46 atmosphere 1015.0 90 < th dose independent rect. 21 7
882 349.84 temperature 10.0 270 > th dose dependent rect. 2 6
911 350.05 wind 7.0 270 < th dose dependent rect. 3 4
930 350.12 temperature 10.0 270 > th dose dependent rect. 7 7
935 350.16 temperature 10.0 90 > th dose dependent rect. 21 7
936 350.22 radiation 40.0 270 < th dose independent rect. 15 3
942 350.27 humidity 80.0 90 < th dose dependent sin 12 NA
952 350.44 wind 3.0 270 < th dose independent rect. 3 4
980 350.50 precipitation 0.1 270 < th dose independent rect. 21 16
981 350.50 precipitation 0.1 270 < th dose dependent rect. 21 16
990 350.58 wind 1.0 270 > th dose independent rect. 15 3
996 350.61 atmosphere 1015.0 270 < th dose independent rect. 21 16