Os02g0781700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
FiT-DB / Search/ Help/ Sample detail
|
Os02g0781700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Conserved hypothetical protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.56 | 0.282 | 11.8 | -0.141 | 0.268 | 0.683 | 0.387 | -0.554 | -0.0426 | 1.45 | 30 | 10 | -- | -- |
| 37.11 | 0.284 | 11.8 | -0.135 | 0.296 | 0.689 | -0.0653 | -- | -0.0287 | 1.23 | 35.87 | 16 | -- | -- |
| 36.77 | 0.282 | 11.8 | -0.14 | 0.276 | 0.692 | -- | -0.266 | -0.0463 | 1.48 | 31.7 | 8 | -- | -- |
| 37.07 | 0.284 | 11.8 | -0.138 | 0.278 | 0.688 | -- | -- | -0.0485 | 1.43 | 31.79 | 8 | -- | -- |
| 38.06 | 0.287 | 11.8 | -0.143 | -- | 0.88 | -- | -0.244 | -0.0179 | -- | 28.57 | 20 | -- | -- |
| 45.78 | 0.317 | 11.8 | -0.16 | 0.852 | -- | -0.00567 | -- | -0.0546 | 0.534 | -- | -- | -- | -- |
| 45.79 | 0.317 | 11.8 | -0.16 | 0.852 | -- | -- | -- | -0.0545 | 0.534 | -- | -- | -- | -- |
| 38.35 | 0.288 | 11.8 | -0.124 | -- | 0.879 | -- | -- | -0.012 | -- | 28.71 | 20 | -- | -- |
| 37.54 | 0.285 | 11.8 | -- | 0.284 | 0.682 | -- | -- | -0.0339 | 1.36 | 32.03 | 8 | -- | -- |
| 91.3 | 0.446 | 11.8 | -0.13 | -- | -- | -- | -- | -0.0401 | -- | -- | -- | -- | -- |
| 46.46 | 0.319 | 11.8 | -- | 0.849 | -- | -- | -- | -0.0368 | 0.525 | -- | -- | -- | -- |
| 38.75 | 0.29 | 11.8 | -- | -- | 0.878 | -- | -- | 0.00111 | -- | 28.67 | 20 | -- | -- |
| 91.75 | 0.447 | 11.8 | -- | -- | -- | -- | -- | -0.0257 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.48 | radiation | 30 | 10 | < th | dose dependent | rect. | 6 | 23 |
| 2 | 35.93 | radiation | 30 | 270 | < th | dose dependent | rect. | 21 | 22 |
| 13 | 36.41 | radiation | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 17 | 36.50 | radiation | 20 | 270 | < th | dose dependent | rect. | 6 | 11 |
| 18 | 36.56 | radiation | 30 | 10 | < th | dose dependent | no | NA | NA |
| 19 | 36.57 | radiation | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 25 | 36.76 | radiation | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 26 | 36.77 | radiation | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 29 | 36.84 | radiation | 20 | 270 | < th | dose independent | rect. | 21 | 21 |
| 42 | 37.02 | radiation | 10 | 720 | > th | dose independent | rect. | 8 | 6 |
| 53 | 37.15 | radiation | 20 | 10 | < th | dose independent | rect. | 6 | 23 |
| 90 | 37.41 | radiation | 30 | 10 | < th | dose dependent | sin | 23 | NA |
| 105 | 37.51 | radiation | 20 | 270 | < th | dose independent | rect. | 22 | 19 |
| 125 | 37.63 | radiation | 30 | 270 | < th | dose dependent | sin | 2 | NA |
| 127 | 37.64 | radiation | 20 | 90 | < th | dose independent | rect. | 6 | 23 |
| 131 | 37.67 | radiation | 20 | 90 | > th | dose independent | rect. | 11 | 23 |
| 139 | 37.68 | radiation | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 145 | 37.71 | radiation | 1 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 151 | 37.74 | radiation | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 154 | 37.76 | radiation | 20 | 270 | > th | dose independent | rect. | 15 | 23 |
| 169 | 37.78 | radiation | 20 | 270 | < th | dose independent | rect. | 23 | 17 |
| 175 | 37.79 | radiation | 10 | 720 | > th | dose independent | sin | 3 | NA |
| 178 | 37.80 | radiation | 1 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 180 | 37.81 | radiation | 1 | 90 | > th | dose dependent | no | NA | NA |
| 182 | 37.81 | radiation | 1 | 90 | > th | dose dependent | rect. | 4 | 14 |
| 336 | 37.93 | radiation | 1 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 338 | 37.94 | radiation | 20 | 10 | < th | dose dependent | rect. | 8 | 8 |
| 344 | 37.95 | radiation | 1 | 90 | > th | dose dependent | rect. | 7 | 11 |
| 347 | 37.96 | radiation | 20 | 720 | < th | dose dependent | rect. | 7 | 7 |
| 424 | 38.06 | radiation | 20 | 90 | > th | dose independent | no | NA | NA |
| 425 | 38.06 | radiation | 20 | 90 | > th | dose independent | rect. | 7 | 10 |
| 536 | 38.08 | radiation | 1 | 270 | > th | dose dependent | sin | 3 | NA |
| 562 | 38.15 | temperature | 30 | 14400 | < th | dose independent | rect. | 3 | 6 |
| 563 | 38.15 | temperature | 30 | 14400 | < th | dose independent | rect. | 1 | 8 |
| 568 | 38.16 | temperature | 30 | 14400 | < th | dose independent | rect. | 7 | 2 |
| 582 | 38.19 | radiation | 20 | 270 | < th | dose independent | rect. | 9 | 9 |
| 625 | 38.23 | temperature | 30 | 14400 | < th | dose independent | rect. | 19 | 14 |
| 670 | 38.26 | temperature | 30 | 14400 | > th | dose dependent | rect. | 8 | 2 |
| 686 | 38.27 | radiation | 20 | 90 | > th | dose independent | sin | 23 | NA |
| 717 | 38.30 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 2 |
| 730 | 38.30 | radiation | 10 | 14400 | > th | dose independent | rect. | 17 | 14 |
| 744 | 38.32 | radiation | 20 | 270 | < th | dose independent | rect. | 6 | 11 |
| 761 | 38.33 | radiation | 40 | 720 | < th | dose dependent | rect. | 6 | 19 |
| 768 | 38.34 | radiation | 40 | 270 | < th | dose dependent | rect. | 9 | 23 |
| 777 | 38.36 | radiation | 1 | 90 | > th | dose dependent | sin | 23 | NA |
| 811 | 38.38 | radiation | 1 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 934 | 38.39 | radiation | 1 | 10 | > th | dose dependent | no | NA | NA |
| 942 | 38.39 | radiation | 1 | 10 | > th | dose dependent | rect. | 5 | 14 |
| 998 | 38.40 | radiation | 20 | 10 | < th | dose independent | rect. | 17 | 23 |