BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0456700 Os09g0456700|AK108731
         (396 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0456700  Conserved hypothetical protein                      580   e-166
Os08g0472400  Conserved hypothetical protein                      455   e-128
Os03g0396000  Conserved hypothetical protein                      137   1e-32

>Os09g0456700 Conserved hypothetical protein
          Length = 396

 Score =  580 bits (1496), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 305/396 (77%), Positives = 305/396 (77%)

Query: 1   MVDVDSRMXXXXXXXXXXXXXXXLSTRXXXXXXXXXXXXRHGLHSFDGVAAAVLSHLRKT 60
           MVDVDSRM               LSTR            RHGLHSFDGVAAAVLSHLRKT
Sbjct: 1   MVDVDSRMAGLAHPAAHAAGLRRLSTRAAAGPPSASASPRHGLHSFDGVAAAVLSHLRKT 60

Query: 61  GVVVLPGLSDAEFARVEAEMGFTFPPDLRAVLAMGLPSGAGFPDWRGRAWLRAAFDLPIA 120
           GVVVLPGLSDAEFARVEAEMGFTFPPDLRAVLAMGLPSGAGFPDWRGRAWLRAAFDLPIA
Sbjct: 61  GVVVLPGLSDAEFARVEAEMGFTFPPDLRAVLAMGLPSGAGFPDWRGRAWLRAAFDLPIA 120

Query: 121 AASLQIAKGALWPRCWGRRPSDPDXXXXXXXXXXXXXPLLVPLFDRCYLPCRPCLAGNPV 180
           AASLQIAKGALWPRCWGRRPSDPD             PLLVPLFDRCYLPCRPCLAGNPV
Sbjct: 121 AASLQIAKGALWPRCWGRRPSDPDRARRLARSAIRRAPLLVPLFDRCYLPCRPCLAGNPV 180

Query: 181 FFITDDRVLCCGLDILHFFTRESSFQPLDVSSPSATPSSGICTPHTRRSLDAVCGGQALR 240
           FFITDDRVLCCGLDILHFFTRESSFQPLDVSSPSATPSSGICTPHTRRSLDAVCGGQALR
Sbjct: 181 FFITDDRVLCCGLDILHFFTRESSFQPLDVSSPSATPSSGICTPHTRRSLDAVCGGQALR 240

Query: 241 WIEFWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLWVDNYLDKLGSVLKKG 300
           WIEFW                                      LWVDNYLDKLGSVLKKG
Sbjct: 241 WIEFWSDAASDRRRRVSSSSEASTASSSSSSSGCPSPPPRSTPLWVDNYLDKLGSVLKKG 300

Query: 301 GWRDREVDEMVEVTASGLFDGEEXXXXXXXXXXXXXFLKTDRCSDSLRRAGWTSEDVSDA 360
           GWRDREVDEMVEVTASGLFDGEE             FLKTDRCSDSLRRAGWTSEDVSDA
Sbjct: 301 GWRDREVDEMVEVTASGLFDGEEAPPADADAVLDALFLKTDRCSDSLRRAGWTSEDVSDA 360

Query: 361 FGLDLRRRKEQPRPAVQIPPEIAAKVQRLAQAVARP 396
           FGLDLRRRKEQPRPAVQIPPEIAAKVQRLAQAVARP
Sbjct: 361 FGLDLRRRKEQPRPAVQIPPEIAAKVQRLAQAVARP 396



>Os08g0472400 Conserved hypothetical protein
          Length = 391

 Score =  455 bits (1170), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 247/376 (65%), Positives = 267/376 (71%), Gaps = 5/376 (1%)

Query: 24  LSTRXXXXXXXXXXXXRHGLHSFDGVAAAVLSHLRKTGVVVLPGLSDAEFARVEAEMGFT 83
           LSTR            RHGLHSF  +A AVLSHLR +GV VLPGLSDAE AR EAEMGF 
Sbjct: 16  LSTRAAAGPSSASASPRHGLHSFHALAGAVLSHLRASGVAVLPGLSDAELARAEAEMGFA 75

Query: 84  FPPDLRAVLAMGLPSGAGFPDWRGRAWLRAAFDLPIAAASLQIAKGALWPRCWGRRPSDP 143
           FPPDLRAVLAMGLPSG GFPDWR RA LR+AFDLPIAAASLQIA+GALWPRCWG RP+DP
Sbjct: 76  FPPDLRAVLAMGLPSGPGFPDWRTRAGLRSAFDLPIAAASLQIARGALWPRCWGPRPADP 135

Query: 144 DXXXXXXXXXXXXXPLLVPLFDRCYLPCRPCLAGNPVFFITDDRVLCCGLDILHFFTRES 203
           D             PLLVPLFDRC+LPCRPCLAGNP+FF+TDDRVLCCGLDILHFFTR+S
Sbjct: 136 DRALRLARSSIRRAPLLVPLFDRCFLPCRPCLAGNPIFFVTDDRVLCCGLDILHFFTRDS 195

Query: 204 SFQPLDV----SSPSATPSSGICTPHTRRSLDAVCGGQALRWIEFWXXXXXXXXXXXXXX 259
           SFQPLD+    SS S  PSSG  TP+ RRSLDA CGG+A RWIEFW              
Sbjct: 196 SFQPLDLRPPSSSSSVAPSSGEATPYMRRSLDAACGGKAPRWIEFWSDAASDRRRRDSSS 255

Query: 260 XXXXXXXXXXXXXXXXXXXXXXXXLWVDNYLDKLGSVLKKGGWRDREVDEMVEVTASGLF 319
                                    WVD YLD+LGSVLK GGWRD EV+EMVEVTASGLF
Sbjct: 256 SEASTASSSSGCASPPARRSRTPH-WVDTYLDRLGSVLKSGGWRDTEVNEMVEVTASGLF 314

Query: 320 DGEEXXXXXXXXXXXXXFLKTDRCSDSLRRAGWTSEDVSDAFGLDLRRRKEQPRPAVQIP 379
           DGEE              LK DRCSDSLRRAGW+SEDVSDA GLDLRR KE+PRPAVQ+P
Sbjct: 315 DGEEAPAVDADAVLDALLLKADRCSDSLRRAGWSSEDVSDALGLDLRRCKERPRPAVQLP 374

Query: 380 PEIAAKVQRLAQAVAR 395
           PEIA KV+RLA++VAR
Sbjct: 375 PEIAVKVERLAKSVAR 390



>Os03g0396000 Conserved hypothetical protein
          Length = 391

 Score =  137 bits (345), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 130/351 (37%), Positives = 166/351 (47%), Gaps = 47/351 (13%)

Query: 53  VLSHLRKTGVVVLPGLSDAEFARVEAEMG-FTFPPDLRAVLAMGLPSGAGFPDWRGRAWL 111
           +++HL   GV VLPGLSD E A  EA +G    PPDLR +LA+G+PSG GFPD+R  A L
Sbjct: 59  LVAHLAAAGVSVLPGLSDPELAHAEAALGGLQLPPDLRDLLAIGVPSGDGFPDYRSPAGL 118

Query: 112 RAAFDLPIAAASLQIAKGALWPRCWGRRPSDPDXXXXXXXXXXXXXPLLVPLFDRCYLPC 171
           R    L  AA  +  A  A  P                        P LVPL+ R Y+P 
Sbjct: 119 RL---LRFAAEEVPAAVAAALPG---------RRAGGRGRWCSSSPPPLVPLYGRHYVPA 166

Query: 172 RPCLAGNPVFFITDDRVLCCGLDILHFFTRESSFQP-------LDVSSPSATPSSGICTP 224
            PCLAGNPVF ++D  V   G +I  F  R  + +P         +S+P   P+      
Sbjct: 167 VPCLAGNPVFHVSDTGVAVAGANIAAFLLRAFAAEPPRGAPLRRQLSAPMPPPAPSPAPS 226

Query: 225 HTRRSLDAVCGGQALRWIEFWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXL 284
             RRSLD+   G+A RWIEFW                                       
Sbjct: 227 TARRSLDSAT-GKAPRWIEFWTDAAAAGDRFVEVSTCTSTRANAAPQ------------- 272

Query: 285 WVDNYLDKLGSVLKKGGWRDREVDEMVEVTASGLFDGEEXXXXXXXXXXXXXFLKTDRCS 344
           WV +YL+  GSVL++GGW   EV+EM   T      GEE              L  DRC 
Sbjct: 273 WVRSYLEWAGSVLRRGGWGGGEVEEM---TTGSGGGGEEAVALA---------LTVDRCC 320

Query: 345 DSLRRAGWTSEDVSDAFGLDLRRRKEQPRPAVQIPPEIAAKVQRLAQAVAR 395
             L RAGW +E+V +A G  L  R  + RPAV +PP++AA+V RLA+AV+R
Sbjct: 321 GELGRAGWGAEEVVEALGALLGPRTRK-RPAVALPPDVAARVGRLAEAVSR 370



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.139    0.455 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,927,167
Number of extensions: 472471
Number of successful extensions: 1655
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1647
Number of HSP's successfully gapped: 5
Length of query: 396
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 293
Effective length of database: 11,657,759
Effective search space: 3415723387
Effective search space used: 3415723387
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 157 (65.1 bits)