Os03g0396000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0396000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 91 | 0.448 | 2.9 | -0.13 | 0.218 | 0.0135 | 0.145 | -4.29 | 0.0289 | 6.8 | 9.099 | 752 | -- | -- |
| 92.1 | 0.447 | 2.91 | -0.109 | 0.243 | 0.777 | 0.163 | -- | 0.0457 | 7.11 | 8.4 | 751 | -- | -- |
| 91.06 | 0.444 | 2.9 | -0.128 | 0.22 | 0.009 | -- | -4.36 | 0.0288 | 6.67 | 9.03 | 745 | -- | -- |
| 89.25 | 0.44 | 2.93 | -0.0715 | 0.234 | 0.76 | -- | -- | 0.0161 | 6.72 | 10.85 | 737 | -- | -- |
| 93.56 | 0.45 | 2.91 | -0.128 | -- | -0.0533 | -- | -4.33 | 0.0304 | -- | 9.035 | 745 | -- | -- |
| 95.88 | 0.459 | 2.93 | -0.17 | 0.189 | -- | 0.297 | -- | -0.0127 | 6.8 | -- | -- | -- | -- |
| 96.07 | 0.459 | 2.93 | -0.166 | 0.193 | -- | -- | -- | -0.0139 | 6.29 | -- | -- | -- | -- |
| 90.9 | 0.444 | 2.93 | -0.0411 | -- | 0.745 | -- | -- | 0.0327 | -- | 10.87 | 841 | -- | -- |
| 87.98 | 0.437 | 2.92 | -- | 0.241 | 0.819 | -- | -- | 0.0353 | 6.85 | 10.89 | 845 | -- | -- |
| 97.99 | 0.463 | 2.94 | -0.161 | -- | -- | -- | -- | -0.00977 | -- | -- | -- | -- | -- |
| 96.79 | 0.46 | 2.93 | -- | 0.19 | -- | -- | -- | 0.00452 | 6.34 | -- | -- | -- | -- |
| 90.94 | 0.444 | 2.93 | -- | -- | 0.758 | -- | -- | 0.0378 | -- | 10.87 | 841 | -- | -- |
| 98.68 | 0.464 | 2.93 | -- | -- | -- | -- | -- | 0.00805 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 85.67 | humidity | 80 | 270 | < th | dose independent | rect. | 22 | 2 |
| 5 | 86.11 | humidity | 80 | 270 | < th | dose dependent | rect. | 22 | 1 |
| 9 | 86.37 | wind | 3 | 10 | > th | dose independent | rect. | 24 | 2 |
| 12 | 87.22 | wind | 3 | 90 | > th | dose independent | rect. | 24 | 2 |
| 19 | 87.87 | humidity | 80 | 270 | < th | dose independent | rect. | 22 | 8 |
| 23 | 87.94 | humidity | 80 | 270 | < th | dose dependent | rect. | 22 | 7 |
| 31 | 89.06 | wind | 9 | 270 | > th | dose independent | rect. | 12 | 3 |
| 33 | 89.07 | wind | 9 | 270 | > th | dose dependent | rect. | 12 | 3 |
| 36 | 89.24 | wind | 1 | 270 | > th | dose dependent | rect. | 23 | 2 |
| 64 | 89.68 | atmosphere | 1005 | 90 | > th | dose dependent | rect. | 1 | 1 |
| 69 | 89.72 | humidity | 90 | 90 | < th | dose independent | rect. | 1 | 1 |
| 73 | 89.76 | wind | 9 | 720 | > th | dose independent | rect. | 15 | 1 |
| 79 | 89.81 | wind | 9 | 720 | > th | dose dependent | rect. | 15 | 1 |
| 104 | 90.07 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 1 | 2 |
| 113 | 90.13 | wind | 9 | 270 | > th | dose dependent | rect. | 19 | 21 |
| 119 | 90.18 | wind | 9 | 270 | > th | dose independent | rect. | 19 | 21 |
| 124 | 90.22 | temperature | 20 | 30 | > th | dose independent | rect. | 1 | 2 |
| 128 | 90.25 | wind | 1 | 90 | > th | dose dependent | rect. | 12 | 15 |
| 151 | 90.40 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 1 | 2 |
| 208 | 90.68 | wind | 1 | 270 | > th | dose independent | rect. | 11 | 15 |
| 223 | 90.73 | wind | 9 | 720 | > th | dose dependent | rect. | 12 | 7 |
| 242 | 90.79 | wind | 9 | 720 | > th | dose independent | sin | 19 | NA |
| 272 | 90.91 | wind | 7 | 270 | > th | dose dependent | rect. | 22 | 3 |
| 281 | 90.92 | wind | 9 | 720 | < th | dose independent | rect. | 9 | 16 |
| 325 | 91.00 | atmosphere | 1005 | 30 | > th | dose independent | rect. | 12 | 15 |
| 360 | 91.05 | wind | 9 | 270 | > th | dose dependent | rect. | 1 | 15 |
| 374 | 91.07 | wind | 9 | 720 | > th | dose independent | rect. | 22 | 21 |
| 388 | 91.08 | wind | 9 | 720 | < th | dose independent | sin | 23 | NA |
| 426 | 91.11 | wind | 9 | 720 | < th | dose independent | rect. | 16 | 23 |
| 443 | 91.13 | temperature | 30 | 90 | < th | dose independent | rect. | 12 | 15 |
| 445 | 91.13 | wind | 9 | 720 | < th | dose independent | rect. | 3 | 17 |
| 455 | 91.15 | wind | 9 | 10 | > th | dose independent | rect. | 15 | 1 |
| 468 | 91.15 | wind | 9 | 10 | > th | dose dependent | rect. | 15 | 1 |
| 531 | 91.19 | wind | 9 | 720 | > th | dose independent | no | NA | NA |
| 578 | 91.21 | wind | 9 | 720 | > th | dose dependent | sin | 19 | NA |
| 627 | 91.27 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 12 | 16 |
| 644 | 91.30 | wind | 9 | 720 | > th | dose independent | rect. | 15 | 23 |
| 646 | 91.31 | wind | 9 | 720 | < th | dose independent | no | NA | NA |
| 647 | 91.31 | humidity | 90 | 10 | < th | dose independent | rect. | 1 | 1 |
| 662 | 91.32 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 12 | 16 |
| 669 | 91.33 | wind | 7 | 270 | < th | dose independent | rect. | 2 | 21 |
| 713 | 91.38 | wind | 9 | 90 | > th | dose dependent | rect. | 12 | 14 |
| 763 | 91.42 | wind | 9 | 720 | < th | dose independent | rect. | 13 | 8 |
| 772 | 91.43 | wind | 9 | 10 | < th | dose independent | rect. | 3 | 23 |
| 843 | 91.49 | wind | 9 | 90 | > th | dose dependent | rect. | 12 | 11 |
| 859 | 91.51 | wind | 7 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 888 | 91.52 | wind | 9 | 720 | > th | dose dependent | rect. | 22 | 21 |
| 901 | 91.54 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 3 | 9 |
| 911 | 91.55 | wind | 9 | 90 | > th | dose independent | rect. | 12 | 14 |
| 987 | 91.61 | wind | 9 | 10 | < th | dose independent | rect. | 4 | 8 |
| 988 | 91.61 | wind | 9 | 90 | < th | dose independent | rect. | 3 | 9 |