BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0396000 Os03g0396000|Os03g0396000
         (391 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G67020.1  | chr5:26749962-26751146 FORWARD LENGTH=395          107   9e-24
AT3G50340.1  | chr3:18665333-18666544 REVERSE LENGTH=404           97   2e-20

>AT5G67020.1 | chr5:26749962-26751146 FORWARD LENGTH=395
          Length = 394

 Score =  107 bits (268), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 105/412 (25%), Positives = 148/412 (35%), Gaps = 59/412 (14%)

Query: 1   MVDVDXXXXXXXXXXXXXSHAAGLRRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLV 60
           MVDVD             +HAAGLRRL                               ++
Sbjct: 1   MVDVDRRMTGLTP-----AHAAGLRRLSARAAAPSTPTIRNSLQSFSPFADK------VI 49

Query: 61  AHLAAAGVSVLPGLSDPXXXXXXXXXXXXXXPPDLRDLLAIGVPSGDGFPDYRSPAGLRL 120
            HL  +G+ + PGLSD               PPDLR +L+ G+  G GFPD+RSP     
Sbjct: 50  NHLKNSGIKIQPGLSD-TEFARVEAEFGFTFPPDLRVILSAGLSVGAGFPDWRSPGARLH 108

Query: 121 LRFXXXXXXXXXXXXXXXXXXXXXXXWCSS--------------------SPPPLVPLYG 160
           LR                        WC S                      P L+P++ 
Sbjct: 109 LR-----AMIDLPVAAVSFQIAKNSLWCKSWGLKPPDPEKALRVARNALKRAPLLIPIFD 163

Query: 161 RHYVPAVPCLAGNPVFHVSDTGVAVAGANIAAFLLRAFAAEPPRGAPLRRQLXXXXXXXX 220
             Y+P  P LAGNPVF + +T +   G++++ F  R  A       P             
Sbjct: 164 HCYIPCNPSLAGNPVFFIDETRIFCCGSDLSEFFERESAFRSSEFFPRILTKQRSVSEKS 223

Query: 221 XXXXXXTARRSLD----SATGKAPRWIEFWTDAAAAGDRFVEVSTCTSTR------ANAA 270
                  +RRSLD    +  GK+ RW+EFW+DAA    R    ST +S+           
Sbjct: 224 AGSSSNFSRRSLDLGRANGAGKS-RWVEFWSDAAVDRCRRNSASTSSSSSSSPDLPKTET 282

Query: 271 PQWVRSYLE----------WAXXXXXXXXXXXXXXXXXXXXXXXXXXXAV-ALALTVDRC 319
           P+WV  Y+           W+                            +  L L   R 
Sbjct: 283 PKWVNQYVNRIGSVLRRGGWSESDIDEIIHVSASGFFEGEMVIIDNQTVLDVLLLKAGRI 342

Query: 320 CGELGRAGWGAEEVVEALGALLGPRTRKRPAVALPPDVAARVGRLAEAVSRA 371
              L ++GW +EEV +ALG    P   ++P   L P +  +  +LAE VS++
Sbjct: 343 SESLRKSGWSSEEVSDALGFDFRPEKERKPVKKLSPMLVEQFEKLAEWVSQS 394



>AT3G50340.1 | chr3:18665333-18666544 REVERSE LENGTH=404
          Length = 403

 Score = 96.7 bits (239), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 107/422 (25%), Positives = 156/422 (36%), Gaps = 70/422 (16%)

Query: 1   MVDVDXXXXXXXXXXXXXSHAAGLRRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLV 60
           MVDVD             +HAAGLRRL                               ++
Sbjct: 1   MVDVDRRMTGLRP-----AHAAGLRRLSARAAAPTTPTVRNSLVSFSSLADQ------VI 49

Query: 61  AHLAAAGVSVLPGLSDPXXXXXXXXXXXXXXPPDLRDLLAIGVPSGDGFPDYRSPAGLRL 120
           +HL  + + V PGL+D               PPDLR +L  G+P G GFPD+RSP G RL
Sbjct: 50  SHLHTSRIQVQPGLTD-SEFARAEAEFAFAFPPDLRAVLTAGLPVGAGFPDWRSP-GARL 107

Query: 121 LRFXXXXXXXXXXXXXXXXXXXXXXXWC--SSSP--------------PPLVPLYGRHYV 164
                                     W    S P              P ++P++   Y+
Sbjct: 108 HLRAMIDLPIAAVSFQIARNTLWSKSWGLRPSDPEKALRVARNALKRAPLMIPIFDHCYI 167

Query: 165 PAVPCLAGNPVFHVSDTGVAVAGANIAAFLLRAFAAEPPRGAPL----RRQLXXXXXXXX 220
           P  P LAGNPVF++ +T +   G++++ F  R          P+    +R +        
Sbjct: 168 PCNPSLAGNPVFYIDETRIFCCGSDLSDFFERESVFRGSDTCPVVLTKQRSVSEKSAGSS 227

Query: 221 XXXXXXTARRSLDSAT---GKAPRWIEFWTDAAAAG-----------------DRFVEVS 260
                  +R SLDS        PRW+EFW+DAA                    +R++++ 
Sbjct: 228 SSSSSNFSRMSLDSGRVHGSSTPRWVEFWSDAAVDRRRRNSASSMSSSHSSSPERYLDLP 287

Query: 261 TCTSTRANAAPQWVRSYLE----------WAXXXXXXXXXXXXXXXXXXXXXXXXXXXAV 310
              +      P+WV  Y+           W+                            +
Sbjct: 288 RSET------PKWVDDYVNRIGSVLRGGGWSESDVDDIVHVSASGFFEGEMVILDNQAVL 341

Query: 311 -ALALTVDRCCGELGRAGWGAEEVVEALGALLGPRTRKRPAVALPPDVAARVGRLAEAVS 369
            AL L   R    L +AGW +EEV +ALG    P   K+P   L P++  R+G+LAE+VS
Sbjct: 342 DALLLKAGRFSESLRKAGWSSEEVSDALGFDFRPEKEKKPVKKLSPELVQRIGKLAESVS 401

Query: 370 RA 371
           R+
Sbjct: 402 RS 403



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.136    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,558,616
Number of extensions: 169408
Number of successful extensions: 269
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 267
Number of HSP's successfully gapped: 3
Length of query: 391
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 290
Effective length of database: 8,337,553
Effective search space: 2417890370
Effective search space used: 2417890370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 113 (48.1 bits)