BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0454300 Os09g0454300|AK063505
         (428 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0454300  Cyclin-like F-box domain containing protein         807   0.0  
Os08g0469500  Conserved hypothetical protein                      528   e-150

>Os09g0454300 Cyclin-like F-box domain containing protein
          Length = 428

 Score =  807 bits (2085), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/428 (93%), Positives = 401/428 (93%)

Query: 1   MEXXXXXXTDMNAVPDGVVQHVLSMLSNVRDVAACACVCRRWRECVPYLPALFFPRNAFD 60
           ME      TDMNAVPDGVVQHVLSMLSNVRDVAACACVCRRWRECVPYLPALFFPRNAFD
Sbjct: 1   MEGGGGGGTDMNAVPDGVVQHVLSMLSNVRDVAACACVCRRWRECVPYLPALFFPRNAFD 60

Query: 61  TXXXXXXXXXXXIGRMVRSVERLRELVIYCPFSMARLPEWLALRSTSLRVLELRMXXXXX 120
           T           IGRMVRSVERLRELVIYCPFSMARLPEWLALRSTSLRVLELRM     
Sbjct: 61  TAAAAGGAADDAIGRMVRSVERLRELVIYCPFSMARLPEWLALRSTSLRVLELRMDAAAA 120

Query: 121 XXXXXGGYLDCIGLARGLEELRLWGVSLTAAPAWGRLDKLRVLEIVGAPLEDSAVKDAIS 180
                GGYLDCIGLARGLEELRLWGVSLTAAPAWGRLDKLRVLEIVGAPLEDSAVKDAIS
Sbjct: 121 DKAEDGGYLDCIGLARGLEELRLWGVSLTAAPAWGRLDKLRVLEIVGAPLEDSAVKDAIS 180

Query: 181 ACPNLTDLSLLGCDCSGAVSIELALLERCRLDFLGAGNCSLSLAAPRVESLEVQGFTWIT 240
           ACPNLTDLSLLGCDCSGAVSIELALLERCRLDFLGAGNCSLSLAAPRVESLEVQGFTWIT
Sbjct: 181 ACPNLTDLSLLGCDCSGAVSIELALLERCRLDFLGAGNCSLSLAAPRVESLEVQGFTWIT 240

Query: 241 LRGGHSLRRLSIAKSTGRVYKVDTGKLPDLEHLSLRGVQWSWAAVSSVLQCARDVKHLVM 300
           LRGGHSLRRLSIAKSTGRVYKVDTGKLPDLEHLSLRGVQWSWAAVSSVLQCARDVKHLVM
Sbjct: 241 LRGGHSLRRLSIAKSTGRVYKVDTGKLPDLEHLSLRGVQWSWAAVSSVLQCARDVKHLVM 300

Query: 301 KIEFSGDFDALQPFPEVDLVDFFNSHPNLRKFDIHGAMFAALCQKNSLKNLDARFCIPCL 360
           KIEFSGDFDALQPFPEVDLVDFFNSHPNLRKFDIHGAMFAALCQKNSLKNLDARFCIPCL
Sbjct: 301 KIEFSGDFDALQPFPEVDLVDFFNSHPNLRKFDIHGAMFAALCQKNSLKNLDARFCIPCL 360

Query: 361 EEVLITVRSPLNAEQKLNTLESLVKYSVRLRSMVIRISQMKNCHDAADDFFEEICKFKYM 420
           EEVLITVRSPLNAEQKLNTLESLVKYSVRLRSMVIRISQMKNCHDAADDFFEEICKFKYM
Sbjct: 361 EEVLITVRSPLNAEQKLNTLESLVKYSVRLRSMVIRISQMKNCHDAADDFFEEICKFKYM 420

Query: 421 NNKKVRVE 428
           NNKKVRVE
Sbjct: 421 NNKKVRVE 428



>Os08g0469500 Conserved hypothetical protein
          Length = 394

 Score =  528 bits (1359), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 271/420 (64%), Positives = 308/420 (73%), Gaps = 39/420 (9%)

Query: 11  MNAVPDGVVQHVLSMLSNVRDVAACACVCRRWRECVPYLPALFFPRNAFDTXXXXXXXXX 70
           M+A+PDGVVQH+LS LS+ RDVAACA V R  R CVP+LPAL+FPR A            
Sbjct: 12  MDALPDGVVQHILSQLSSARDVAACAGVSRGMRGCVPFLPALYFPRGA-FDAAGGAAAAD 70

Query: 71  XXIGRMVRSVERLRELVIYCPFSMARLPEWLALRSTSLRVLELRMXXXXXXXXXXGGYLD 130
             IGRMV +  RL ELVIYCPFS ARLP WLA RS SLRVLELRM           G+LD
Sbjct: 71  DAIGRMVEAAARLEELVIYCPFSAARLPRWLAARSASLRVLELRMDSAVSSGAG-SGHLD 129

Query: 131 CIGLARGLEELRLWGVSLTAAPAWGRLDKLRVLEIVGAPLEDSAVKDAISACPNLTDLSL 190
           CIG    LEELRLWG+++T APAWG+L++LRVLEIVGA + D AV  A+ ACPNLTD   
Sbjct: 130 CIGAVANLEELRLWGLTMTRAPAWGQLERLRVLEIVGAAVRDVAVNGAVGACPNLTD--- 186

Query: 191 LGCDCSGAVSIELALLERCRLDFLGAGNCSLSLAAPRVESLEVQGFTWITLRGGHSLRRL 250
                                           LAAP VESLE+QGF WI+L+GG  L+ L
Sbjct: 187 --------------------------------LAAPLVESLEIQGFCWISLQGGIRLKHL 214

Query: 251 SIAKS--TGRVYKVDTGKLPDLEHLSLRGVQWSWAAVSSVLQCARDVKHLVMKIEFSGDF 308
           +IAK+  TG VY ++ GKLP+LE LSLRGVQWSW A+SSVLQCAR+VK+LVMKIEF GD 
Sbjct: 215 TIAKNTGTGSVYNIEIGKLPELEKLSLRGVQWSWGAISSVLQCAREVKYLVMKIEFCGDH 274

Query: 309 DALQPFPEVDLVDFFNSHPNLRKFDIHGAMFAALCQKNSLKNLDARFCIPCLEEVLITVR 368
           D L+PFPEVDLVDFFNSHP L KF+IHGAMFAA+CQKNSLKNLD+RF IPCLEEVLITVR
Sbjct: 275 DTLEPFPEVDLVDFFNSHPKLIKFEIHGAMFAAMCQKNSLKNLDSRFSIPCLEEVLITVR 334

Query: 369 SPLNAEQKLNTLESLVKYSVRLRSMVIRISQMKNCHDAADDFFEEICKFKYMNNKKVRVE 428
           SPLNAE KLNTLESLVKYS R+R MV+RISQMKNCH +AD FFEEICKF YMNN +VR+E
Sbjct: 335 SPLNAELKLNTLESLVKYSPRMRRMVVRISQMKNCHGSADGFFEEICKFMYMNNGRVRIE 394



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.138    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,901,789
Number of extensions: 488425
Number of successful extensions: 2025
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 2022
Number of HSP's successfully gapped: 2
Length of query: 428
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 324
Effective length of database: 11,605,545
Effective search space: 3760196580
Effective search space used: 3760196580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 157 (65.1 bits)