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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0454300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin-like F-box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.26 (0.0265) R2 : 0.446
β1 : 0.125 (0.0968) R2dD : 0.00172 R2D : -0.00142
β2 : 0.88 (0.0685) R2dC : 0.205 R2C : 0.172
β3 : 4.61 (0.433) R2dE : 0.162 R2E : -0.0476
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -20.4 (1.54) R2dD*E : 0.263 R2D*E : 0.105
γ1 : 0.208 (0.0565) R2dN8 : 0.0226 R2N8 : 0.0074
σ : 0.494
deviance : 112.6
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_____
C
peak time of C : 19.4
E
wheather : humidity
threshold : 90.2
memory length : 86
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 2.95
open length of G : 2.08

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
110.68 0.494 3.26 0.132 0.876 4.66 0.856 -20.6 0.211 19.4 90.09 89 2.98 2.02
149.71 0.57 3.25 0.0704 0.875 2.5 1.15 -- 0.147 19.2 92 104 2.27 2.17
112.6 0.494 3.26 0.125 0.88 4.61 -- -20.4 0.208 19.4 90.2 86 2.95 2.08
153.56 0.577 3.25 0.103 0.868 2.58 -- -- 0.184 19.3 91.43 106 2.27 2.08
152.71 0.576 3.23 0.11 -- 4.25 -- -20.5 0.208 -- 89 84 2.85 2.47
160.31 0.594 3.25 0.131 0.824 -- 1.22 -- 0.185 19.4 -- -- -- --
164.21 0.6 3.25 0.101 0.824 -- -- -- 0.186 19.7 -- -- -- --
190.28 0.642 3.23 0.0945 -- 2.56 -- -- 0.186 -- 87.13 109 2.28 0.849
153.8 0.578 3.25 -- 0.868 2.62 -- -- 0.18 19.4 91 110 2.2 2.08
200.76 0.662 3.23 0.0904 -- -- -- -- 0.174 -- -- -- -- --
164.48 0.6 3.25 -- 0.823 -- -- -- 0.174 19.7 -- -- -- --
189.9 0.642 3.23 -- -- 2.71 -- -- 0.181 -- 88 117 2.2 0.782
200.97 0.662 3.23 -- -- -- -- -- 0.164 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 110.74 humidity 90.0 90 < th dose dependent rect. 3 2
4 111.03 humidity 90.0 90 < th dose independent rect. 3 1
12 111.28 humidity 90.0 10 < th dose independent rect. 3 1
30 116.95 humidity 80.0 90 < th dose dependent rect. 24 3
51 126.01 atmosphere 1005.0 30 > th dose dependent rect. 3 1
59 133.62 temperature 20.0 10 < th dose dependent rect. 3 1
91 137.95 temperature 20.0 90 < th dose independent rect. 2 1
132 141.28 temperature 30.0 720 < th dose independent rect. 9 7
143 141.97 atmosphere 1005.0 90 > th dose independent rect. 3 1
145 142.05 temperature 30.0 270 < th dose independent rect. 9 14
146 142.25 temperature 30.0 720 < th dose independent rect. 19 18
149 142.38 temperature 30.0 720 < th dose independent rect. 4 9
167 142.89 temperature 30.0 720 < th dose independent rect. 2 11
172 143.00 temperature 30.0 720 < th dose independent rect. 18 22
188 143.28 temperature 30.0 720 < th dose independent rect. 1 13
203 143.74 humidity 90.0 90 < th dose independent rect. 2 7
205 143.81 temperature 30.0 270 < th dose independent rect. 11 17
213 144.06 temperature 30.0 90 < th dose independent rect. 4 23
224 144.19 temperature 30.0 720 < th dose independent sin 7 NA
226 144.20 temperature 30.0 720 < th dose independent rect. 4 17
281 145.03 temperature 30.0 270 < th dose independent rect. 1 23
284 145.07 temperature 30.0 270 < th dose independent sin 11 NA
303 145.34 temperature 30.0 720 > th dose independent rect. 8 5
317 145.41 temperature 30.0 720 > th dose independent sin 7 NA
323 145.46 temperature 20.0 270 > th dose dependent rect. 15 7
367 145.67 temperature 30.0 270 < th dose independent rect. 9 22
383 145.85 temperature 30.0 270 < th dose independent rect. 9 20
386 145.86 temperature 25.0 720 > th dose dependent rect. 8 1
392 145.89 temperature 30.0 270 > th dose independent rect. 16 18
456 146.29 wind 1.0 90 > th dose independent rect. 3 1
504 146.54 temperature 30.0 720 > th dose dependent rect. 8 5
527 146.60 atmosphere 1000.0 90 > th dose independent rect. 4 23
531 146.63 temperature 30.0 270 < th dose independent sin 20 NA
535 146.64 wind 1.0 10 > th dose independent rect. 3 1
542 146.69 wind 3.0 30 < th dose independent rect. 3 1
550 146.71 precipitation 0.1 90 < th dose independent rect. 4 23
551 146.71 precipitation 0.1 90 < th dose dependent rect. 4 23
555 146.74 temperature 10.0 270 > th dose dependent rect. 5 15
556 146.75 temperature 30.0 270 > th dose independent sin 11 NA
577 146.81 temperature 25.0 90 > th dose dependent rect. 17 16
587 146.85 temperature 30.0 720 > th dose dependent rect. 11 1
596 146.91 atmosphere 1005.0 30 > th dose dependent rect. 3 6
607 146.98 temperature 30.0 720 > th dose dependent sin 8 NA
612 147.01 temperature 25.0 270 > th dose dependent rect. 17 2
622 147.11 temperature 30.0 720 < th dose independent rect. 23 22
672 147.20 temperature 25.0 270 > th dose dependent rect. 15 18
678 147.22 temperature 30.0 270 > th dose independent rect. 16 3
696 147.25 temperature 30.0 270 > th dose independent rect. 17 1
703 147.28 humidity 50.0 90 > th dose independent rect. 4 23
744 147.46 precipitation 0.1 90 < th dose independent rect. 3 1
746 147.46 precipitation 0.1 90 < th dose dependent rect. 3 1
772 147.57 temperature 15.0 720 > th dose dependent rect. 8 1
775 147.58 wind 7.0 90 < th dose independent rect. 3 1
802 147.66 temperature 10.0 90 > th dose independent rect. 3 1
804 147.66 temperature 30.0 90 < th dose independent rect. 3 1
805 147.66 humidity 50.0 90 > th dose independent rect. 3 1
808 147.66 atmosphere 995.0 90 > th dose independent rect. 3 1
809 147.66 atmosphere 1010.0 90 < th dose independent rect. 3 1
811 147.66 radiation 1.0 90 < th dose independent rect. 3 1
816 147.66 temperature 10.0 90 > th dose independent rect. 4 23
817 147.66 radiation 1.0 90 < th dose dependent rect. 3 1
829 147.70 wind 9.0 1440 < th dose independent rect. 4 1
830 147.70 temperature 10.0 1440 > th dose independent rect. 4 1
833 147.70 temperature 30.0 1440 < th dose independent rect. 4 1
837 147.70 humidity 50.0 1440 > th dose independent rect. 4 1
846 147.70 atmosphere 995.0 1440 > th dose independent rect. 4 1
847 147.70 atmosphere 1015.0 1440 < th dose independent rect. 4 1
848 147.70 radiation 20.0 1440 < th dose independent rect. 4 1
860 147.70 temperature 10.0 1440 > th dose independent rect. 5 23
932 147.89 humidity 50.0 270 > th dose independent rect. 9 14
964 148.00 atmosphere 1005.0 270 < th dose independent rect. 17 1
978 148.05 wind 9.0 30 < th dose dependent rect. 3 1