BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0453000 Os09g0453000|AK120561
(141 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0453000 Protein of unknown function UPF0220 family pro... 200 3e-52
Os02g0566900 Conserved hypothetical protein 157 2e-39
Os08g0469200 84 4e-17
>Os09g0453000 Protein of unknown function UPF0220 family protein
Length = 141
Score = 200 bits (508), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 108/141 (76%), Positives = 108/141 (76%)
Query: 1 MENLALLXXXXXXXXXXXXXXXXXXXXXDAVVCSSVQVSFLHYLPGIFASLAALMFNAVN 60
MENLALL DAVVCSSVQVSFLHYLPGIFASLAALMFNAVN
Sbjct: 1 MENLALLWGIIGPGVAGAVFGAGWWFWVDAVVCSSVQVSFLHYLPGIFASLAALMFNAVN 60
Query: 61 KDEIXXXXXXXXXXXXEWRVKLWLFVAYVVSFVCLAGSVGMLVQDALTDKGPSVWTGVAG 120
KDEI EWRVKLWLFVAYVVSFVCLAGSVGMLVQDALTDKGPSVWTGVAG
Sbjct: 61 KDEIGYDYYSPYGDDSEWRVKLWLFVAYVVSFVCLAGSVGMLVQDALTDKGPSVWTGVAG 120
Query: 121 VLQCVLVLISGLIYWTCHSED 141
VLQCVLVLISGLIYWTCHSED
Sbjct: 121 VLQCVLVLISGLIYWTCHSED 141
>Os02g0566900 Conserved hypothetical protein
Length = 142
Score = 157 bits (398), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 79/113 (69%), Positives = 88/113 (77%), Gaps = 1/113 (0%)
Query: 29 DAVVCSSVQVSFLHYLPGIFASLAALMFNAVNKDEIXXXXXXXXXXXXEWRVKLWLFVAY 88
DAVVCS+ V FLHYLPG+FAS AALMFN V +++ EWR+KLWLFV+Y
Sbjct: 31 DAVVCSAAAVPFLHYLPGLFASFAALMFNCVKRED-ANYNYYSPYDDSEWRLKLWLFVSY 89
Query: 89 VVSFVCLAGSVGMLVQDALTDKGPSVWTGVAGVLQCVLVLISGLIYWTCHSED 141
VVSFV LAG+VG LVQDALTD GPS WTGVAGVLQ V VLISGL+YWTCHSED
Sbjct: 90 VVSFVSLAGAVGFLVQDALTDTGPSAWTGVAGVLQSVFVLISGLMYWTCHSED 142
>Os08g0469200
Length = 107
Score = 83.6 bits (205), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/132 (42%), Positives = 69/132 (52%), Gaps = 32/132 (24%)
Query: 1 MENLALLXXXXXXXXXXXXXXXXXXXXXDAVVCSSVQVSFLHYLPGIFASLAALMFNAVN 60
M+NLALL DAVVCS+VQVSFLHYLP
Sbjct: 1 MDNLALLRGILGPGVAGAVFGVGWWFWVDAVVCSAVQVSFLHYLPA-------------- 46
Query: 61 KDEIXXXXXXXXXXXXEWRVKLWLFVAYVVSFVCLAGSVGMLVQDALTDKGPSVWTGVAG 120
+ +++ + ++ +AG+VG+LVQDALTDKGPSVWTGVAG
Sbjct: 47 ------------------DIIIFIKSSEALALCGIAGAVGLLVQDALTDKGPSVWTGVAG 88
Query: 121 VLQCVLVLISGL 132
VLQCVLVLISG+
Sbjct: 89 VLQCVLVLISGV 100
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.327 0.138 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,256,657
Number of extensions: 91397
Number of successful extensions: 212
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 3
Length of query: 141
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 50
Effective length of database: 12,284,327
Effective search space: 614216350
Effective search space used: 614216350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 151 (62.8 bits)