Os09g0453000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function UPF0220 family protein.
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Os09g0453000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function UPF0220 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.33 | 0.207 | 11.9 | -0.339 | 0.297 | 0.591 | 0.23 | -0.204 | -0.0631 | 18.7 | 1.42 | 181 | -- | -- |
| 19.53 | 0.206 | 11.9 | -0.332 | 0.295 | 0.598 | 0.234 | -- | -0.0594 | 18.9 | 1.42 | 174 | -- | -- |
| 19.46 | 0.205 | 11.9 | -0.341 | 0.298 | 0.593 | -- | -0.208 | -0.0645 | 18.8 | 1.41 | 179 | -- | -- |
| 19.66 | 0.207 | 11.9 | -0.335 | 0.325 | 0.575 | -- | -- | -0.0666 | 18.5 | 1.43 | 163 | -- | -- |
| 22.11 | 0.219 | 11.9 | -0.358 | -- | 0.665 | -- | -0.212 | -0.0709 | -- | 1.42 | 283 | -- | -- |
| 22.69 | 0.223 | 11.9 | -0.306 | 0.803 | -- | -0.127 | -- | -0.0382 | 14.8 | -- | -- | -- | -- |
| 22.74 | 0.223 | 11.9 | -0.309 | 0.803 | -- | -- | -- | -0.0389 | 14.8 | -- | -- | -- | -- |
| 22.18 | 0.219 | 11.9 | -0.362 | -- | 0.674 | -- | -- | -0.0717 | -- | 0.7621 | 311 | -- | -- |
| 22.7 | 0.222 | 11.9 | -- | 0.317 | 0.568 | -- | -- | -0.0377 | 18.4 | 1.43 | 160 | -- | -- |
| 60.09 | 0.362 | 11.9 | -0.343 | -- | -- | -- | -- | -0.0594 | -- | -- | -- | -- | -- |
| 25.26 | 0.235 | 11.9 | -- | 0.809 | -- | -- | -- | -0.00454 | 14.8 | -- | -- | -- | -- |
| 25.57 | 0.236 | 11.9 | -- | -- | 0.665 | -- | -- | -0.0243 | -- | 1.008 | 314 | -- | -- |
| 63.19 | 0.371 | 11.9 | -- | -- | -- | -- | -- | -0.0214 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.33 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 14 | 8 |
| 3 | 18.36 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 1 | 20 |
| 4 | 18.44 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 15 | 6 |
| 9 | 18.48 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 6 | 22 |
| 11 | 18.49 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 16 | 14 |
| 13 | 18.51 | humidity | 50.0 | 270 | > th | dose independent | rect. | 16 | 14 |
| 14 | 18.52 | radiation | 1.0 | 90 | < th | dose independent | rect. | 4 | 19 |
| 16 | 18.52 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 4 | 19 |
| 21 | 18.58 | temperature | 25.0 | 90 | < th | dose independent | rect. | 13 | 18 |
| 33 | 18.62 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 6 | 22 |
| 34 | 18.63 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 20 |
| 36 | 18.63 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 15 | 16 |
| 43 | 18.67 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 2 | 18 |
| 50 | 18.71 | temperature | 30.0 | 270 | < th | dose independent | rect. | 16 | 14 |
| 57 | 18.76 | radiation | 1.0 | 90 | > th | dose independent | rect. | 6 | 13 |
| 107 | 18.95 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 20 |
| 118 | 18.97 | radiation | 20.0 | 270 | < th | dose independent | rect. | 16 | 14 |
| 123 | 18.99 | radiation | 1.0 | 270 | > th | dose independent | rect. | 17 | 23 |
| 127 | 19.01 | temperature | 25.0 | 90 | < th | dose independent | rect. | 13 | 8 |
| 138 | 19.06 | temperature | 25.0 | 90 | < th | dose independent | rect. | 15 | 6 |
| 152 | 19.09 | radiation | 1.0 | 90 | > th | dose independent | sin | 23 | NA |
| 172 | 19.12 | radiation | 1.0 | 90 | < th | dose dependent | sin | 23 | NA |
| 207 | 19.23 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 13 | 14 |
| 209 | 19.24 | humidity | 70.0 | 10 | > th | dose independent | rect. | 16 | 15 |
| 213 | 19.25 | radiation | 1.0 | 270 | < th | dose dependent | sin | 1 | NA |
| 218 | 19.26 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 19 |
| 230 | 19.28 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 11 | 14 |
| 231 | 19.28 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 16 | 15 |
| 236 | 19.29 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 22 | 3 |
| 255 | 19.31 | temperature | 25.0 | 90 | < th | dose independent | rect. | 3 | 20 |
| 268 | 19.34 | temperature | 25.0 | 10 | < th | dose independent | rect. | 13 | 9 |
| 270 | 19.34 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 23 | 5 |
| 273 | 19.34 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 15 | 13 |
| 276 | 19.35 | radiation | 1.0 | 90 | < th | dose independent | sin | 23 | NA |
| 288 | 19.36 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 4 | 19 |
| 327 | 19.42 | radiation | 40.0 | 10 | < th | dose independent | rect. | 7 | 21 |
| 338 | 19.43 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 23 | 1 |
| 340 | 19.43 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 17 | 12 |
| 355 | 19.45 | humidity | 50.0 | 90 | > th | dose independent | rect. | 3 | 20 |
| 359 | 19.45 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 4 | 18 |
| 371 | 19.47 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 11 |
| 373 | 19.47 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 17 | 1 |
| 376 | 19.47 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 11 |
| 391 | 19.49 | temperature | 25.0 | 90 | < th | dose independent | rect. | 17 | 4 |
| 415 | 19.51 | wind | 9.0 | 270 | < th | dose independent | rect. | 16 | 14 |
| 420 | 19.51 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 4 | 18 |
| 437 | 19.54 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 10 |
| 438 | 19.54 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 6 | 10 |
| 441 | 19.54 | temperature | 10.0 | 270 | > th | dose independent | rect. | 16 | 14 |
| 442 | 19.54 | radiation | 40.0 | 270 | < th | dose independent | rect. | 16 | 14 |
| 451 | 19.55 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 23 | 5 |
| 472 | 19.57 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 13 | 5 |
| 473 | 19.57 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 16 | 14 |
| 476 | 19.57 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 13 | 5 |
| 496 | 19.59 | temperature | 20.0 | 270 | > th | dose independent | rect. | 21 | 4 |
| 510 | 19.59 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 15 | 4 |
| 534 | 19.61 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 17 | 3 |
| 543 | 19.62 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 6 | 22 |
| 550 | 19.62 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 6 | 22 |
| 558 | 19.64 | wind | 1.0 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 560 | 19.64 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 10 |
| 572 | 19.65 | humidity | 50.0 | 10 | > th | dose independent | rect. | 4 | 19 |
| 577 | 19.66 | temperature | 25.0 | 90 | < th | dose independent | rect. | 4 | 3 |
| 592 | 19.67 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 602 | 19.68 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 3 | 20 |
| 603 | 19.68 | temperature | 15.0 | 270 | > th | dose independent | rect. | 1 | 21 |
| 609 | 19.69 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 22 | 3 |
| 625 | 19.69 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 21 |
| 636 | 19.70 | radiation | 40.0 | 90 | < th | dose independent | rect. | 6 | 22 |
| 655 | 19.72 | wind | 7.0 | 270 | < th | dose independent | rect. | 22 | 3 |
| 657 | 19.72 | temperature | 10.0 | 270 | > th | dose independent | rect. | 22 | 3 |
| 658 | 19.72 | temperature | 30.0 | 270 | < th | dose independent | rect. | 22 | 3 |
| 659 | 19.72 | humidity | 50.0 | 270 | > th | dose independent | rect. | 22 | 3 |
| 662 | 19.72 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 22 | 3 |
| 663 | 19.72 | radiation | 1.0 | 270 | < th | dose independent | rect. | 22 | 3 |
| 668 | 19.72 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 22 | 3 |
| 681 | 19.72 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 22 | 3 |
| 686 | 19.72 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 22 | 3 |
| 691 | 19.73 | wind | 1.0 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 694 | 19.73 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 13 | 12 |
| 698 | 19.73 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 13 | 12 |
| 707 | 19.74 | radiation | 1.0 | 270 | < th | dose independent | rect. | 14 | 17 |
| 708 | 19.74 | wind | 9.0 | 270 | < th | dose independent | rect. | 1 | 21 |
| 720 | 19.75 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 4 | 19 |
| 740 | 19.77 | radiation | 10.0 | 90 | < th | dose independent | rect. | 4 | 2 |
| 751 | 19.78 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 4 | 2 |
| 755 | 19.78 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 4 | 2 |
| 757 | 19.78 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 4 | 2 |
| 787 | 19.80 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 802 | 19.81 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 803 | 19.81 | wind | 7.0 | 90 | < th | dose independent | rect. | 4 | 2 |
| 812 | 19.81 | temperature | 15.0 | 90 | > th | dose independent | rect. | 3 | 20 |
| 825 | 19.82 | temperature | 10.0 | 90 | > th | dose independent | rect. | 4 | 2 |
| 828 | 19.82 | humidity | 50.0 | 90 | > th | dose independent | rect. | 4 | 2 |
| 832 | 19.82 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 4 | 2 |
| 844 | 19.82 | temperature | 10.0 | 90 | > th | dose independent | rect. | 6 | 22 |
| 851 | 19.83 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 4 | 2 |
| 852 | 19.83 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 1 | 5 |
| 859 | 19.83 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 4 | 2 |
| 860 | 19.83 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 4 | 3 |
| 861 | 19.83 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 1 | 5 |
| 869 | 19.84 | temperature | 25.0 | 270 | < th | dose independent | rect. | 17 | 1 |
| 872 | 19.84 | temperature | 20.0 | 10 | > th | dose independent | rect. | 23 | 5 |
| 873 | 19.84 | radiation | 1.0 | 270 | < th | dose independent | rect. | 14 | 5 |
| 878 | 19.84 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 11 | 14 |
| 892 | 19.84 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 11 | 14 |
| 903 | 19.85 | radiation | 40.0 | 90 | < th | dose independent | rect. | 7 | 20 |
| 920 | 19.86 | wind | 9.0 | 90 | < th | dose dependent | rect. | 4 | 2 |
| 923 | 19.86 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 13 | 4 |
| 931 | 19.87 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 23 | 1 |
| 945 | 19.87 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 23 | 5 |
| 950 | 19.87 | temperature | 20.0 | 10 | > th | dose independent | rect. | 7 | 21 |
| 953 | 19.87 | wind | 9.0 | 90 | < th | dose independent | rect. | 6 | 22 |
| 970 | 19.88 | humidity | 90.0 | 90 | > th | dose independent | rect. | 4 | 3 |