BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0442600 Os09g0442600|AB095097
(229 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0442600 Similar to RSH2 338 2e-93
Os08g0457600 Similar to RSH2 187 5e-48
>Os09g0442600 Similar to RSH2
Length = 229
Score = 338 bits (867), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 177/229 (77%), Positives = 177/229 (77%)
Query: 1 MSLPAISLYTSPPPGAVYSSEFDPSSRGXXXXXXXXXXXXXHRPPAAAGGLSCLFXXXXX 60
MSLPAISLYTSPPPGAVYSSEFDPSSRG HRPPAAAGGLSCLF
Sbjct: 1 MSLPAISLYTSPPPGAVYSSEFDPSSRGSSPPCSTAPPSTSHRPPAAAGGLSCLFSSPAA 60
Query: 61 XXXXXXXXXHDELGALWQDRSDEPAFAXXXXXYSSSPLKWRDLXXXXXXSPVSVFQGXXX 120
HDELGALWQDRSDEPAFA YSSSPLKWRDL SPVSVFQG
Sbjct: 61 AASPPRAPPHDELGALWQDRSDEPAFAGGGGGYSSSPLKWRDLHHHHHHSPVSVFQGPSS 120
Query: 121 XXXXXXXXXXXWLAGRDRDRERLFAGFVRNALGSCVDYAPALSPRSEVGGGELAFELDEN 180
WLAGRDRDRERLFAGFVRNALGSCVDYAPALSPRSEVGGGELAFELDEN
Sbjct: 121 SPAASRSPPASWLAGRDRDRERLFAGFVRNALGSCVDYAPALSPRSEVGGGELAFELDEN 180
Query: 181 LAEASPACEPCARELLAGAQARHRIFHEELVVKTFFEAEKAHRGQLHNL 229
LAEASPACEPCARELLAGAQARHRIFHEELVVKTFFEAEKAHRGQLHNL
Sbjct: 181 LAEASPACEPCARELLAGAQARHRIFHEELVVKTFFEAEKAHRGQLHNL 229
>Os08g0457600 Similar to RSH2
Length = 718
Score = 187 bits (475), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 125/244 (51%), Positives = 140/244 (57%), Gaps = 28/244 (11%)
Query: 1 MSLPAISLYTSPPPGAVYSSEFDPSS----RGXXXXXXXX--XXXXXHRPPAAAGGLSCL 54
MS+PAI++YTSPP GAVY+S RG HR A AGGLSCL
Sbjct: 1 MSVPAIAVYTSPP-GAVYTSSSSSELEASSRGSAPCATAAPPSPASSHRHQAIAGGLSCL 59
Query: 55 FXXXXXXXXXXXXXXHDELGALWQDRSDEPA---FAXXXXXYS----SSPLKWRDLXXXX 107
F DELGALW DRS E YS SSP KWRD+
Sbjct: 60 FSSPTAAPRAAAA--QDELGALWHDRSGEATAVGGGGGGGGYSYPQPSSPFKWRDMLHH- 116
Query: 108 XXSPVSVFQGXXXXXXXXXXXXXXWLAGRDRDRERLFAGFVRNALGSCVDYAPA------ 161
SPV +F WLAGR+R ERLF+ FVRNALGSCVDYAP
Sbjct: 117 --SPVPLFH-SPASSPASRSPSASWLAGRER--ERLFSSFVRNALGSCVDYAPVAALPLG 171
Query: 162 LSPRSEVGGGELAFELDENLAEASPACEPCARELLAGAQARHRIFHEELVVKTFFEAEKA 221
+S VG GELAFELDE+L+EA P+CEP AR+LLAGAQARHRIFH+ELVVK FFEAE+A
Sbjct: 172 VSAAVGVGAGELAFELDEHLSEAEPSCEPYARDLLAGAQARHRIFHDELVVKAFFEAERA 231
Query: 222 HRGQ 225
HRGQ
Sbjct: 232 HRGQ 235
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.135 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,241,772
Number of extensions: 259012
Number of successful extensions: 477
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 471
Number of HSP's successfully gapped: 2
Length of query: 229
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 132
Effective length of database: 11,971,043
Effective search space: 1580177676
Effective search space used: 1580177676
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 154 (63.9 bits)