BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0440600 Os09g0440600|Os09g0440600
         (107 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0440600  Conserved hypothetical protein                      184   2e-47
Os05g0404000  Mitochodrial transcription termination factor-...    64   2e-11

>Os09g0440600 Conserved hypothetical protein
          Length = 107

 Score =  184 bits (466), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 95/107 (88%), Positives = 95/107 (88%)

Query: 1   MEXXXXXXXXXXXXFLASLGIDPGELAGLELHATIDVMRERVEFLHSLKRVEFLHSLGLS 60
           ME            FLASLGIDPGELAGLELHATIDVMRERVEFLHSLKRVEFLHSLGLS
Sbjct: 1   MERGRAARRADVDAFLASLGIDPGELAGLELHATIDVMRERVEFLHSLKRVEFLHSLGLS 60

Query: 61  ARRDDGGDIYPRRPHAAPAPVSAPLGLVGSSGVVLHCRCPPHEGLGG 107
           ARRDDGGDIYPRRPHAAPAPVSAPLGLVGSSGVVLHCRCPPHEGLGG
Sbjct: 61  ARRDDGGDIYPRRPHAAPAPVSAPLGLVGSSGVVLHCRCPPHEGLGG 107



>Os05g0404000 Mitochodrial transcription termination factor-related family
           protein
          Length = 508

 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/34 (91%), Positives = 33/34 (97%)

Query: 15  FLASLGIDPGELAGLELHATIDVMRERVEFLHSL 48
           FLASLG+DPGELAGLEL AT+DVMRERVEFLHSL
Sbjct: 89  FLASLGVDPGELAGLELPATVDVMRERVEFLHSL 122



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.143    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,068,910
Number of extensions: 183038
Number of successful extensions: 694
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 692
Number of HSP's successfully gapped: 2
Length of query: 107
Length of database: 17,035,801
Length adjustment: 75
Effective length of query: 32
Effective length of database: 13,119,751
Effective search space: 419832032
Effective search space used: 419832032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 149 (62.0 bits)